ggKbase home page

SCN18_13_7_16_R1_B_scaffold_2525

Search features with annotation key words

Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_13_7_16_R1_B_scaffold_2525_1
SCNPILOT_EXPT_750_BF_Sphingobacteriia_44_15, SCNPILOT_EXPT_750_BF_Sphingobacteriia_44_15, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2..286)
DNA (285bp) protein (95aa)
oxidoreductase n=1 Tax=Cytophagales str. B6 RepID=UPI0003B78E39
Putative oxidoreductase {ECO:0000313|EMBL:GAO44655.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
oxidoreductase domain-containing protein
SCN18_13_7_16_R1_B_scaffold_2525_2
SCNPILOT_EXPT_750_BF_Sphingobacteriia_44_15, SCNPILOT_EXPT_750_BF_Sphingobacteriia_44_15, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(559..951)
DNA (393bp) protein (131aa)
Response regulator receiver protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4CBM9_SPHS2
Putative two-component response regulator {ECO:0000313|EMBL:GAO42768.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
response regulator receiver protein
SCN18_13_7_16_R1_B_scaffold_2525_3
SCNPILOT_EXPT_750_BF_Sphingobacteriia_44_15, SCNPILOT_EXPT_750_BF_Sphingobacteriia_44_15, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1578..2654)
DNA (1077bp) protein (359aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
tRNA-dihydrouridine synthase n=1 Tax=Niabella soli DSM 19437 RepID=H1NV66_9SPHI
NifR3 family TIM-barrel protein
SCN18_13_7_16_R1_B_scaffold_2525_4
SCNPILOT_EXPT_750_BF_Sphingobacteriia_44_15, SCNPILOT_EXPT_750_BF_Sphingobacteriia_44_15, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

2841..3380
DNA (540bp) protein (180aa)
Transcriptional regulator, AraC family n=2 Tax=Bacteroidetes RepID=F0S649_PEDSD
Regulator with DNA binding domain protein {ECO:0000313|EMBL:CDT31694.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
AraC family transcriptional regulator
SCN18_13_7_16_R1_B_scaffold_2525_5
SCNPILOT_EXPT_750_BF_Sphingobacteriia_44_15, SCNPILOT_EXPT_750_BF_Sphingobacteriia_44_15, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3464..5881
DNA (2418bp) protein (806aa)
Cation-transporting ATPase PacS {ECO:0000313|EMBL:CDT31706.1}; EC=3.6.3.- {ECO:0000313|EMBL:CDT31706.1};; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
copper-translocating P-type ATPase (EC:3.6.3.4)
Copper-translocating P-type ATPase n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S650_PEDSD
SCN18_13_7_16_R1_B_scaffold_2525_6
SCNPILOT_EXPT_750_BF_Sphingobacteriia_44_15, SCNPILOT_EXPT_750_BF_Sphingobacteriia_44_15, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5934..6512
DNA (579bp) protein (193aa)
hypothetical protein n=1 Tax=Pedobacter arcticus RepID=UPI000303069F
Cyclic nucleotide binding regulatory protein {ECO:0000313|EMBL:EDM37753.1}; TaxID=391596 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. BAL39.;"
cyclic nucleotide-binding protein
SCN18_13_7_16_R1_B_scaffold_2525_7
SCNPILOT_EXPT_750_BF_Sphingobacteriia_44_15, SCNPILOT_EXPT_750_BF_Sphingobacteriia_44_15, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

6588..7562
DNA (975bp) protein (325aa)
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1 (EC:2.3.1.41)
alcohol dehydrogenase n=1 Tax=Pedobacter arcticus RepID=UPI0002FE81F4
Alcohol dehydrogenase {ECO:0000313|EMBL:KGO08625.1}; TaxID=172045 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia miricola (Chryseobacterium miricola).;"
SCN18_13_7_16_R1_B_scaffold_2525_8
SCNPILOT_EXPT_750_BF_Sphingobacteriia_44_15, SCNPILOT_EXPT_750_BF_Sphingobacteriia_44_15, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7757..7984
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W8X0_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:GAE64127.1}; TaxID=1218103 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium indologenes NBRC 14944.;"
heavy metal transport/detoxification protein
SCN18_13_7_16_R1_B_scaffold_2525_9
SCNPILOT_EXPT_750_BF_Sphingobacteriia_44_15, SCNPILOT_EXPT_750_BF_Sphingobacteriia_44_15, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7995..8453
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0ME25_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:KIA94732.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
hypothetical protein
Displaying 9 items

View Taxonomy