ggKbase home page

SCN18_13_7_16_R1_B_scaffold_167

Search features with annotation key words

Displaying items 1-30 of 108 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_13_7_16_R1_B_scaffold_167_1
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..231)
DNA (231bp) protein (77aa)
FmdB family transcriptional regulator n=1 Tax=Bordetella sp. FB-8 RepID=UPI000368D974
FmdB family regulatory protein
Putative regulatory protein, FmdB {ECO:0000313|EMBL:EDM83772.1}; TaxID=391597 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Limnobacter.;" source="Limnobacter sp. MED105.;"
SCN18_13_7_16_R1_B_scaffold_167_2
SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(316..1764)
DNA (1449bp) protein (483aa)
Na+/solute symporter n=1 Tax=Acidovorax sp. NO-1 RepID=H0BYF7_9BURK
Na+/solute symporter {ECO:0000313|EMBL:EHL22608.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
Na+/solute symporter
SCN18_13_7_16_R1_B_scaffold_167_3
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1884..3449)
DNA (1566bp) protein (522aa)
ubiquinone biosynthesis protein UbiB n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036CE464
2-polyprenylphenol 6-hydroxylase
Tax=GWA2_Curvibacter_64_110_curated
SCN18_13_7_16_R1_B_scaffold_167_4
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3449..3982)
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CFB7_9BURK
hypothetical protein
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCN18_13_7_16_R1_B_scaffold_167_5
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4063..5037)
DNA (975bp) protein (325aa)
Import inner membrane translocase subunit Tim44 n=2 Tax=Alicycliphilus denitrificans RepID=E8U0W8_ALIDB
import inner membrane translocase subunit tim44
Import inner membrane translocase subunit Tim44 {ECO:0000313|EMBL:GAO26805.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCN18_13_7_16_R1_B_scaffold_167_6
SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5150..5884)
DNA (735bp) protein (245aa)
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE {ECO:0000256|HAMAP-Rule:MF_01813}; EC=2.1.1.163 {ECO:0000256|HAMAP-Rule:MF_01813};; EC=2.1.1.201 {ECO:0000256|HAMAP-Rule:MF_01813};; 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase {ECO:0000256|HAMAP-Rule:MF_01813}; Demethylmenaquinone methyltransferase {ECO:0000256|HAMAP-Rule:MF_01813}; TaxID=1458275 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis str. Niagara R.;"
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KTC8_9BURK
ubiquinone/menaquinone biosynthesis methyltransferase
SCN18_13_7_16_R1_B_scaffold_167_7
SCNPILOT_SOLID2_TRIM150_Phage_12, SCNPILOT_SOLID2_TRIM150_Phage_12, SCNPILOT_SOLID2_TRIM150_Phage_12, SCNPILOT_SOLID2_TRIM150_Phage_12, SCNPILOT_SOLID2_TRIM150_Phage_12, Phage

Not on your lists

5980..8871
DNA (2892bp) protein (964aa)
phosphoenolpyruvate carboxylase (EC:4.1.1.31)
Phosphoenolpyruvate carboxylase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MMT4_9BURK
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCN18_13_7_16_R1_B_scaffold_167_8
CN-SCN_Acidovorax_22x, CN-SCN_Acidovorax_22x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8887..9348)
DNA (462bp) protein (154aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U0W6_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAO26803.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCN18_13_7_16_R1_B_scaffold_167_9
SCNPILOT_SOLID_1_TRIM150_Plasmid_3, SCNPILOT_SOLID_1_TRIM150_Plasmid_3, SCNPILOT_SOLID_1_TRIM150_Plasmid_3, SCNPILOT_SOLID_1_TRIM150_Plasmid_3, SCNPILOT_SOLID_1_TRIM150_Plasmid_3, Plasmid-like

Not on your lists

9481..10590
DNA (1110bp) protein (370aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI000310B6B5
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CAP43060.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCN18_13_7_16_R1_B_scaffold_167_10
SCNpilot_P_inoc_Acidovorax_64_34, SCNpilot_P_inoc_Acidovorax_64_34, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10673..14581)
DNA (3909bp) protein (1303aa)
FAD linked oxidase domain protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W4D1_ACISJ
FAD linked oxidase domain-containing protein
FAD linked oxidase domain protein {ECO:0000313|EMBL:ABM41106.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCN18_13_7_16_R1_B_scaffold_167_11
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14784..16013)
DNA (1230bp) protein (410aa)
D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95)
3-phosphoglycerate dehydrogenase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036D0A28
Phosphoglycerate dehydrogenase and related dehydrogenases {ECO:0000313|EMBL:GAD23256.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
SCN18_13_7_16_R1_B_scaffold_167_12
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16291..17613
DNA (1323bp) protein (441aa)
Carbohydrate ABC transporter substrate-binding protein, CUT1 family n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W4C9_ACISJ
extracellular solute-binding protein
Carbohydrate ABC transporter substrate-binding protein, CUT1 family {ECO:0000313|EMBL:ABM41104.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCN18_13_7_16_R1_B_scaffold_167_13
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17675..18556
DNA (882bp) protein (294aa)
SN-glycerol-3-phosphate transport systempermease protein ugpA n=3 Tax=Comamonas testosteroni RepID=D0J067_COMT2
Glycerol-3-phosphate transporter permease {ECO:0000313|EMBL:EXU81033.1}; TaxID=1457173 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas aquatica DA1877.;"
glycerol-3-phosphate transporter permease
SCN18_13_7_16_R1_B_scaffold_167_14
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18559..19407
DNA (849bp) protein (283aa)
Carbohydrate ABC transporter membrane protein 2, CUT1 family n=2 Tax=Acidovorax RepID=A1W4C7_ACISJ
binding-protein-dependent transport systems inner membrane component
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ACM32268.1}; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCN18_13_7_16_R1_B_scaffold_167_15
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19529..20551
DNA (1023bp) protein (341aa)
Candidate ABC type sugar transport system, ATP-binding component n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XXA5_RAMTT
sugar ABC transporter ATP-binding protein
Candidate ABC type sugar transport system, ATP-binding component {ECO:0000313|EMBL:AEG94240.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCN18_13_7_16_R1_B_scaffold_167_16
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20614..21660
DNA (1047bp) protein (349aa)
Alcohol dehydrogenase zinc-binding domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TX01_ALIDB
NADPH:quinone reductase and related Zn-dependent oxidoreductase
NADPH:quinone reductase and related Zn-dependent oxidoreductase {ECO:0000313|EMBL:BAO81345.1}; TaxID=1458425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium A1.;"
SCN18_13_7_16_R1_B_scaffold_167_17
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21657..22406
DNA (750bp) protein (250aa)
glycerophosphodiester phosphodiesterase (EC:3.1.4.46)
membrane protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000366D8F1
Glycerophosphoryl diester phosphodiesterase {ECO:0000313|EMBL:GAD23251.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
SCN18_13_7_16_R1_B_scaffold_167_18
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22414..24264
DNA (1851bp) protein (617aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI000360F814
Uncharacterized protein {ECO:0000313|EMBL:KFN50648.1}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
sulfatase
SCN18_13_7_16_R1_B_scaffold_167_19
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24441..24713)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T2D8_ACIDE
Uncharacterized protein {ECO:0000313|EMBL:EER61328.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
hypothetical protein
SCN18_13_7_16_R1_B_scaffold_167_20
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24785..26059
DNA (1275bp) protein (425aa)
Glutamyl-tRNA reductase n=1 Tax=Acidovorax sp. CF316 RepID=J0U952_9BURK
glutamyl-tRNA reductase
Tax=RIFCSPHIGHO2_12_FULL_Curvibacter_63_18_curated
SCN18_13_7_16_R1_B_scaffold_167_21
CN-SCN_Comamonas_56x, CN-SCN_Comamonas_56x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26285..26833
DNA (549bp) protein (183aa)
Type IV pilus modification protein PilV n=1 Tax=Comamonas testosteroni KF-1 RepID=B7WRV6_COMTE
Type IV pilus modification protein PilV {ECO:0000313|EMBL:EED69010.1}; Flags: Precursor;; TaxID=399795 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni KF-1.;"
type IV pilus modification protein PilV
SCN18_13_7_16_R1_B_scaffold_167_22
CN-SCN_Comamonas_56x, CN-SCN_Comamonas_56x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26830..27876
DNA (1047bp) protein (349aa)
Putative transmembrane protein n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TT16_ACIAC
putative transmembrane protein
Putative transmembrane protein {ECO:0000313|EMBL:ADX47367.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
SCN18_13_7_16_R1_B_scaffold_167_23
SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27898..28569
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DWV8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD98308.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
SCN18_13_7_16_R1_B_scaffold_167_24
CN-SCN_Comamonas_56x, CN-SCN_Comamonas_56x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28592..33028
DNA (4437bp) protein (1479aa)
Tfp pilus assembly protein tip-associated adhesin PilY1-like protein n=2 Tax=Comamonas testosteroni RepID=B7WRV8_COMTE
Tfp pilus assembly protein tip-associated adhesin PilY1-like protein {ECO:0000313|EMBL:EED69012.1}; Flags: Precursor;; TaxID=399795 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni KF-1.;"
Tfp pilus assembly protein tip-associated adhesin PilY1-like protein
SCN18_13_7_16_R1_B_scaffold_167_25
Acidovorax sp. KKS102_CN-SCN_Acidovorax_28x, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33025..33489
DNA (465bp) protein (155aa)
Tfp pilus assembly protein PilE n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TT13_ACIAC
Tfp pilus assembly protein PilE
Tfp pilus assembly protein PilE {ECO:0000313|EMBL:ABM34101.1}; Flags: Precursor;; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
SCN18_13_7_16_R1_B_scaffold_167_26
CN-SCN_Comamonas_56x, CN-SCN_Comamonas_56x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33486..34061
DNA (576bp) protein (192aa)
Tfp pilus assembly protein FimT n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TT12_ACIAC
Tfp pilus assembly protein FimT
Tax=RIFCSPHIGHO2_12_FULL_Curvibacter_63_18_curated
SCN18_13_7_16_R1_B_scaffold_167_27
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34127..35209
DNA (1083bp) protein (361aa)
Peptide chain release factor 1 n=2 Tax=Alicycliphilus denitrificans RepID=F4G8N4_ALIDK
peptide chain release factor 1
Tax=GWA2_Curvibacter_64_110_curated
SCN18_13_7_16_R1_B_scaffold_167_28
CN-SCN_Acidovorax_22x, CN-SCN_Acidovorax_22x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35250..36164
DNA (915bp) protein (305aa)
type 12 methyltransferase; K02493 release factor glutamine methyltransferase [EC:2.1.1.-] id=12549988 bin=BDI species=Acidovorax sp. CF316 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
protein-(glutamine-N5) methyltransferase (EC:2.1.1.72)
Tax=GWA2_Curvibacter_64_110_curated
SCN18_13_7_16_R1_B_scaffold_167_29
unknown

Not on your lists

36199..36588
DNA (390bp) protein (130aa)
SCN18_13_7_16_R1_B_scaffold_167_30
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36653..37006
DNA (354bp) protein (118aa)
Displaying items 1-30 of 108 in total

View Taxonomy