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SCN18_13_7_16_R1_B_scaffold_349

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Displaying items 1-30 of 61 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_13_7_16_R1_B_scaffold_349_1
CN-SCN_Acidovorax_22x, CN-SCN_Acidovorax_22x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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268..864
DNA (597bp) protein (199aa)
hypothetical protein id=5083691 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCN18_13_7_16_R1_B_scaffold_349_2
SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(889..1275)
DNA (387bp) protein (129aa)
DoxX family protein n=1 Tax=Neisseria flavescens SK114 RepID=C5TK35_NEIFL
DoxX family protein {ECO:0000313|EMBL:EER57051.1}; TaxID=596320 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria.;" source="Neisseria flavescens SK114.;"
DoxX protein
SCN18_13_7_16_R1_B_scaffold_349_trna_1
unknown

Not on your lists

comp(1425..1498)
DNA (74bp)
transferRNA Val
SCN18_13_7_16_R1_B_scaffold_349_3
Acidovorax sp. KKS102_CN-SCN_Acidovorax_28x, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1565..3772)
DNA (2208bp) protein (736aa)
GTP pyrophosphokinase n=2 Tax=Acidovorax sp. MR-S7 RepID=UPI000369A206
(P)ppGpp synthetase I SpoT/RelA {ECO:0000313|EMBL:GAD24860.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
(p)ppGpp synthetase I, SpoT/RelA
SCN18_13_7_16_R1_B_scaffold_349_4
Acidovorax sp. KKS102_CN-SCN_Acidovorax_28x, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3769..4701)
DNA (933bp) protein (311aa)
Putative hydrolase or acyltransferase of alpha/beta superfamily n=1 Tax=Polaromonas sp. CF318 RepID=J2U4K2_9BURK
Putative hydrolase or acyltransferase of alpha/beta superfamily {ECO:0000313|EMBL:EJL86027.1}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
alpha/beta fold family hydrolase
SCN18_13_7_16_R1_B_scaffold_349_5
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4888..5631)
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XVQ7_RAMTT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG92820.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCN18_13_7_16_R1_B_scaffold_349_6
unknown

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comp(5734..6150)
DNA (417bp) protein (139aa)

This feature has no annotations

SCN18_13_7_16_R1_B_scaffold_349_7
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6243..6974
DNA (732bp) protein (244aa)
Candidate response regulator, OmpR n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XVQ6_RAMTT
response regulator OmpR
Candidate response regulator, OmpR {ECO:0000313|EMBL:AEG92819.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCN18_13_7_16_R1_B_scaffold_349_8
SCNpilot_P_inoc_Acidovorax_64_34, SCNpilot_P_inoc_Acidovorax_64_34, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7000..8478
DNA (1479bp) protein (493aa)
integral membrane sensor signal transduction histidine kinase id=12549557 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
histidine kinase
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCN18_13_7_16_R1_B_scaffold_349_9
CN-SCN_Acidovorax_22x, CN-SCN_Acidovorax_22x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8484..8981)
DNA (498bp) protein (166aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:4.6.1.12)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MNY5_9BURK
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
SCN18_13_7_16_R1_B_scaffold_349_10
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8978..9679)
DNA (702bp) protein (234aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase id=1266330 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Tax=BJP_08E140C01_Burkholderiales_65_30
SCN18_13_7_16_R1_B_scaffold_349_11
CN-SCN_Comamonas_56x, CN-SCN_Comamonas_56x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9755..12085)
DNA (2331bp) protein (777aa)
Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CYP7_VARPS
molybdopterin binding aldehyde oxidase and xanthine dehydrogenase
Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding {ECO:0000313|EMBL:ACS19006.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCN18_13_7_16_R1_B_scaffold_349_12
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12329..15805
DNA (3477bp) protein (1159aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
Transcription-repair-coupling factor n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MNY3_9BURK
transcription-repair coupling factor
SCN18_13_7_16_R1_B_scaffold_349_13
Dyadobacter fermentans_SCNpilot_P_inoc_Dyadobacter_48_40, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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15903..16496
DNA (594bp) protein (198aa)
Putative lipoprotein n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q479Q0_DECAR
Putative lipoprotein {ECO:0000313|EMBL:CDH44125.1}; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
lipoprotein
SCN18_13_7_16_R1_B_scaffold_349_14
CN-SCN_Phenylobacterium_31x, RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16607..17188
DNA (582bp) protein (194aa)
Putative ring-cleavage extradiol dioxygenase n=1 Tax=Acidovorax sp. CF316 RepID=J1EKX5_9BURK
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
SCN18_13_7_16_R1_B_scaffold_349_15
SCNPILOT_CONT_500_P_Xanthomonadales_66_42, SCNPILOT_CONT_500_P_Xanthomonadales_66_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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17204..17692
DNA (489bp) protein (163aa)
GAF sensor protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VQ45_9GAMM
Diguanylate cyclase {ECO:0000313|EMBL:GAN45887.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
diguanylate cyclase
SCN18_13_7_16_R1_B_scaffold_349_16
Acidovorax sp. KKS102_CN-SCN_Acidovorax_28x, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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17662..18276
DNA (615bp) protein (205aa)
Putative uncharacterized protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BVQ3_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:EHL23585.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
hypothetical protein
SCN18_13_7_16_R1_B_scaffold_349_17
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18343..19086
DNA (744bp) protein (248aa)
phosphoserine phosphatase SerB (EC:3.1.3.3)
phosphoserine phosphatase n=1 Tax=Caldimonas manganoxidans RepID=UPI0003710F58
Tax=GWA2_Curvibacter_64_110_curated
SCN18_13_7_16_R1_B_scaffold_349_18
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19112..20476)
DNA (1365bp) protein (455aa)
Tryptophan synthase beta chain n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21YU1_RHOFD
predicted alternative tryptophan synthase beta-subunit
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCN18_13_7_16_R1_B_scaffold_349_19
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20739..22187)
DNA (1449bp) protein (483aa)
exodeoxyribonuclease I (EC:3.1.11.1)
Exodeoxyribonuclease I n=2 Tax=Alicycliphilus denitrificans RepID=E8TZY7_ALIDB
ExodeoxyribonucleaseIprotein {ECO:0000313|EMBL:GAO23518.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCN18_13_7_16_R1_B_scaffold_349_20
Hydrogenophaga sp. PBC_SCNpilot_P_inoc_Hydrogenophaga_70_12, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22628..23296)
DNA (669bp) protein (223aa)
phosphoglycolate phosphatase (EC:3.1.3.18)
Phosphoglycolate phosphatase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12CK8_POLSJ
Tax=RIFCSPHIGHO2_12_FULL_Curvibacter_63_18_curated
SCN18_13_7_16_R1_B_scaffold_349_21
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23296..24036)
DNA (741bp) protein (247aa)
Ubiquinone biosynthesis O-methyltransferase n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y3I2_RAMTT
ubiG; DHHB methyltransferase
Ubiquinone biosynthesis O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00472, ECO:0000256|SAAS:SAAS00063564}; 2-polyprenyl-6-hydroxyphenol methylase {ECO:0000256|HAMAP-Rule:MF_00472}; 3-demethylubiquinone 3-O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00472}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCN18_13_7_16_R1_B_scaffold_349_22
SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24186..24845)
DNA (660bp) protein (220aa)
OmpA/MotB domain protein n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TSA1_ACIAC
OmpA/MotB domain-containing protein
OmpA/MotB domain protein {ECO:0000313|EMBL:ABM33839.1}; Flags: Precursor;; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
SCN18_13_7_16_R1_B_scaffold_349_23
CN-SCN_Acidovorax_22x, CN-SCN_Acidovorax_22x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


25077..27734
DNA (2658bp) protein (886aa)
DNA gyrase, a subunit (EC:5.99.1.3)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
DNA gyrase subunit A n=2 Tax=Alicycliphilus denitrificans RepID=E8TXE6_ALIDB
SCN18_13_7_16_R1_B_scaffold_349_24
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27741..28340
DNA (600bp) protein (200aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12CL2_POLSJ
Uncharacterized protein {ECO:0000313|EMBL:CDS49875.1}; TaxID=1504672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CG9_12.;"
hypothetical protein
SCN18_13_7_16_R1_B_scaffold_349_25
Hydrogenophaga sp. PBC_SCNpilot_P_inoc_Hydrogenophaga_70_12, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28395..29501
DNA (1107bp) protein (369aa)
Chorismate mutase {ECO:0000313|EMBL:EIK90851.1}; EC=5.4.99.5 {ECO:0000313|EMBL:EIK90851.1};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
Chorismate mutase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MNR1_9BURK
prephenate dehydratase
SCN18_13_7_16_R1_B_scaffold_349_26
Acidovorax sp. KKS102_CN-SCN_Acidovorax_28x, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29494..30366
DNA (873bp) protein (291aa)
Prephenate dehydrogenase n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VR18_POLNA
prephenate dehydrogenase
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCN18_13_7_16_R1_B_scaffold_349_27
SCNpilot_P_inoc_Acidovorax_64_34, SCNpilot_P_inoc_Acidovorax_64_34, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30435..32561
DNA (2127bp) protein (709aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|RuleBase:RU000531, ECO:0000256|SAAS:SAAS00240549}; EC=2.5.1.19 {ECO:0000256|RuleBase:RU000531, ECO:0000256|SAAS:SAAS00240533};; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003803082
Deoxycytidine kinase
SCN18_13_7_16_R1_B_scaffold_349_28
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


32779..34464
DNA (1686bp) protein (562aa)
30S ribosomal protein S1 n=2 Tax=Alicycliphilus denitrificans RepID=E8TXE1_ALIDB
30S ribosomal protein S1
30S ribosomal protein S1 {ECO:0000256|PIRNR:PIRNR002111}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCN18_13_7_16_R1_B_scaffold_349_29
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34526..34816
DNA (291bp) protein (97aa)
Bacterial nucleoid DNA-binding protein n=1 Tax=Acidovorax sp. CF316 RepID=J0KQK3_9BURK
integration host factor subunit beta
Bacterial nucleoid DNA-binding protein {ECO:0000313|EMBL:EJE53443.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
Displaying items 1-30 of 61 in total

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