ggKbase home page

SCN18_13_7_16_R1_B_scaffold_551

Search features with annotation key words

Displaying items 1-30 of 64 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_13_7_16_R1_B_scaffold_551_1
CN-SCN_Comamonas_56x, CN-SCN_Comamonas_56x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..393
DNA (393bp) protein (131aa)
acetyl-CoA acetyltransferase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003631824
Beta-ketoadipyl CoA thiolase {ECO:0000313|EMBL:GAD23689.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
Acetyl-CoA acetyltransferase / Beta-ketoadipyl CoA thiolase
SCN18_13_7_16_R1_B_scaffold_551_2
SCNpilot_P_inoc_Acidovorax_64_34, SCNpilot_P_inoc_Acidovorax_64_34, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(469..2331)
DNA (1863bp) protein (621aa)
Transporter, monovalent cation:proton antiporter-2 (CPA2) family n=1 Tax=Polaromonas sp. CF318 RepID=J2LCY2_9BURK
glutathione-regulated potassium-efflux system protein KefC
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCN18_13_7_16_R1_B_scaffold_551_3
Acidovorax sp. KKS102_CN-SCN_Acidovorax_28x, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2428..3054
DNA (627bp) protein (209aa)
Cobyrinic acid a,c-diamide synthase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12E52_POLSJ
cobyrinic acid a,c-diamide synthase
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCN18_13_7_16_R1_B_scaffold_551_4
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3090..3542
DNA (453bp) protein (151aa)
MaoC family dehydratase n=1 Tax=Curvibacter lanceolatus RepID=UPI00036388B8
Acyl dehydratase {ECO:0000313|EMBL:CDS51206.1}; TaxID=1504672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CG9_12.;"
dehydratase
SCN18_13_7_16_R1_B_scaffold_551_5
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3549..4025)
DNA (477bp) protein (159aa)
tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XZD6_RAMTT
tRNA/rRNA methyltransferase-like protein
SCN18_13_7_16_R1_B_scaffold_551_6
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4040..4753)
DNA (714bp) protein (238aa)
ComF family protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CJV5_VARPS
ComF family protein
Tax=GWA2_Curvibacter_64_110_curated
SCN18_13_7_16_R1_B_scaffold_551_7
SCNpilot_P_inoc_Acidovorax_64_34, SCNpilot_P_inoc_Acidovorax_64_34, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4818..5741
DNA (924bp) protein (308aa)
Biotin synthesis protein BioC n=1 Tax=Acidovorax sp. KKS102 RepID=K0IDZ3_9BURK
biotin synthesis protein BioC
Tax=GWA2_Curvibacter_64_110_curated
SCN18_13_7_16_R1_B_scaffold_551_8
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5983..7173
DNA (1191bp) protein (397aa)
Cytochrome c oxidase subunit 2; EC=1.9.3.1;; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Cytochrome c oxidase subunit 2 n=2 Tax=Alicycliphilus denitrificans RepID=E8U1F4_ALIDB
cytochrome c oxidase subunit II
SCN18_13_7_16_R1_B_scaffold_551_9
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7236..8867
DNA (1632bp) protein (544aa)
Cytochrome c oxidase, subunit I n=2 Tax=Alicycliphilus denitrificans RepID=E8U1F3_ALIDB
Cytochrome c oxidase, subunit I {ECO:0000313|EMBL:ADV01206.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
cytochrome c oxidase subunit I
SCN18_13_7_16_R1_B_scaffold_551_10
unknown

Not on your lists

8897..9028
DNA (132bp) protein (44aa)

This feature has no annotations

SCN18_13_7_16_R1_B_scaffold_551_11
SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9041..9664
DNA (624bp) protein (208aa)
Cytochrome c oxidase assembly protein CtaG/Cox11 n=2 Tax=Alicycliphilus denitrificans RepID=E8U1F1_ALIDB
cytochrome c oxidase assembly protein ctag/cox11
Cytochrome C oxidase assembly protein {ECO:0000313|EMBL:KJA10651.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
SCN18_13_7_16_R1_B_scaffold_551_12
CN-SCN_Rubrivivax_131x, CN-SCN_Rubrivivax_131x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9661..9909
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HQN8_ACHXA
Uncharacterized protein {ECO:0000313|EMBL:KDB52474.1}; TaxID=1286631 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sphaerotilus.;" source="Sphaerotilus natans subsp. natans DSM 6575.;"
hypothetical protein
SCN18_13_7_16_R1_B_scaffold_551_13
CN-SCN_Comamonas_56x, CN-SCN_Comamonas_56x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9983..10864
DNA (882bp) protein (294aa)
Cytochrome c oxidase subunit III n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KTF6_9BURK
MFS transporter {ECO:0000313|EMBL:EYC52582.1}; TaxID=1458275 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis str. Niagara R.;"
cytochrome c oxidase subunit III
SCN18_13_7_16_R1_B_scaffold_551_14
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10931..11185)
DNA (255bp) protein (85aa)
Putative transmembrane protein n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BSW3_DELAS
putative transmembrane protein
Putative transmembrane protein {ECO:0000313|EMBL:ABX34323.1}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (strain DSM 14801 / SPH-1).;"
SCN18_13_7_16_R1_B_scaffold_551_15
SCNpilot_P_inoc_Acidovorax_64_34, SCNpilot_P_inoc_Acidovorax_64_34, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11216..11953
DNA (738bp) protein (246aa)
transmembrane cytochrome oxidase n=1 Tax=Comamonas sp. B-9 RepID=UPI0003956A05
putative transmembrane cytochrome oxidase
Tax=GWA2_Curvibacter_64_110_curated
SCN18_13_7_16_R1_B_scaffold_551_16
Acidovorax sp. KKS102_CN-SCN_Acidovorax_28x, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11907..12653
DNA (747bp) protein (249aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI000365C1EF
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
SCN18_13_7_16_R1_B_scaffold_551_17
Acidovorax sp. KKS102_CN-SCN_Acidovorax_28x, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12660..13835
DNA (1176bp) protein (392aa)
Cytochrome oxidase assembly n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WBL6_ACISJ
cytochrome oxidase assembly
Cytochrome oxidase assembly {ECO:0000313|EMBL:ABM43641.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCN18_13_7_16_R1_B_scaffold_551_18
Acidovorax sp. KKS102_CN-SCN_Acidovorax_28x, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13832..14761
DNA (930bp) protein (310aa)
Protoheme IX farnesyltransferase n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KTF1_9BURK
protoheme IX farnesyltransferase
Tax=CG_Rhodof_03
SCN18_13_7_16_R1_B_scaffold_551_19
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14761..15387
DNA (627bp) protein (209aa)
Electron transport protein SCO1/SenC n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V364_VARPE
electron transport protein sco1/senc
Electron transport protein SCO1/SenC {ECO:0000313|EMBL:ADU39203.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCN18_13_7_16_R1_B_scaffold_551_20
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15699..22070
DNA (6372bp) protein (2124aa)
Putative multicopper oxidase n=1 Tax=Methylocystis sp. (strain SC2) RepID=J7Q3E4_METSZ
multicopper oxidase
Putative multicopper oxidase {ECO:0000313|EMBL:CCJ05629.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCN18_13_7_16_R1_B_scaffold_551_21
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22084..22707
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Methylocystis sp. (strain SC2) RepID=J7QL02_METSZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCJ05628.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCN18_13_7_16_R1_B_scaffold_551_22
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22719..24638
DNA (1920bp) protein (640aa)
40-residue YVTN family beta-propeller repeat protein n=1 Tax=Methylocystis sp. (strain SC2) RepID=J7Q6Y5_METSZ
40-residue YVTN family beta-propeller repeat-containing protein
40-residue YVTN family beta-propeller repeat protein {ECO:0000313|EMBL:CCJ05627.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCN18_13_7_16_R1_B_scaffold_551_23
CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, Acidobacteria

Not on your lists

24635..25201
DNA (567bp) protein (189aa)
Sco1/SenC family protein n=1 Tax=Pseudomonas denitrificans ATCC 13867 RepID=M4WSP7_PSEDE
Sco1/SenC family protein
Sco1/SenC family protein {ECO:0000313|EMBL:AGI23133.1}; TaxID=1294143 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas denitrificans ATCC 13867.;"
SCN18_13_7_16_R1_B_scaffold_551_24
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25198..26493
DNA (1296bp) protein (432aa)
Putative Cytochrome c n=1 Tax=Methylocystis sp. (strain SC2) RepID=J7QNZ6_METSZ
Cytochrome c
Putative Cytochrome c {ECO:0000313|EMBL:CCJ05625.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCN18_13_7_16_R1_B_scaffold_551_25
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26495..27961
DNA (1467bp) protein (489aa)
Uncharacterized protein n=1 Tax=Methylocystis sp. (strain SC2) RepID=J7Q3E3_METSZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCJ05624.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCN18_13_7_16_R1_B_scaffold_551_26
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27980..28981)
DNA (1002bp) protein (334aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U1E2_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB86285.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCN18_13_7_16_R1_B_scaffold_551_27
SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29110..30054)
DNA (945bp) protein (315aa)
RNA polymerase sigma 70 n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003618904
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
RNA polymerase sigma-32 subunit RpoH
SCN18_13_7_16_R1_B_scaffold_551_28
SCNpilot_P_inoc_Acidovorax_64_34, SCNpilot_P_inoc_Acidovorax_64_34, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30212..30448
DNA (237bp) protein (79aa)
Exodeoxyribonuclease 7 small subunit n=1 Tax=Acidovorax sp. CF316 RepID=J0KH87_9BURK
exonuclease VII small subunit
Tax=CG_Rhodof_04
SCN18_13_7_16_R1_B_scaffold_551_29
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30432..31346
DNA (915bp) protein (305aa)
Polyprenyl synthetase n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MEU7_ACIET
polyprenyl synthetase
Polyprenyl synthetase {ECO:0000313|EMBL:ACM32433.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCN18_13_7_16_R1_B_scaffold_551_30
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31349..33265
DNA (1917bp) protein (639aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000255|HAMAP-Rule:MF_00315}; EC=2.2.1.7 {ECO:0000255|HAMAP-Rule:MF_00315};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000255|HAMAP-Rule:MF_00315}; Short=DXP synthase {ECO:0000255|HAMAP-Rule:MF_00315};; Short=DXPS {ECO:0000255|HAMAP-Rule:MF_00315};; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Acidovorax sp. (strain JS42) RepID=DXS_ACISJ
Displaying items 1-30 of 64 in total

View Taxonomy