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SCN18_13_7_16_R1_B_scaffold_700

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Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_13_7_16_R1_B_scaffold_700_1
Acidovorax sp. KKS102_CN-SCN_Acidovorax_28x, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..2303)
DNA (2301bp) protein (767aa)
Heavy metal translocating P-type ATPase {ECO:0000313|EMBL:AEB84569.1}; EC=3.6.3.4 {ECO:0000313|EMBL:AEB84569.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
heavy metal translocating P-type ATPase (EC:3.6.3.4)
Heavy metal translocating P-type ATPase n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W602_ACISJ
SCN18_13_7_16_R1_B_scaffold_700_2
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2399..2935)
DNA (537bp) protein (179aa)
Cytochrome c class I n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TTJ0_ALIDB
cytochrome c class i
Cytochrome c class I {ECO:0000313|EMBL:ADV00464.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCN18_13_7_16_R1_B_scaffold_700_3
SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, Plasmid-like

Not on your lists

comp(2932..3438)
DNA (507bp) protein (169aa)
Blue (Type 1) copper domain protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G9R0_ALIDK
blue (type 1) copper domain-containing protein
Blue (Type 1) copper domain protein {ECO:0000313|EMBL:AEB84560.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCN18_13_7_16_R1_B_scaffold_700_4
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3460..4584)
DNA (1125bp) protein (375aa)
Copper resistance B n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G9Q9_ALIDK
copper resistance B
Copper resistance B {ECO:0000313|EMBL:AEB84559.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCN18_13_7_16_R1_B_scaffold_700_5
SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, Plasmid-like

Not on your lists

comp(4581..6362)
DNA (1782bp) protein (594aa)
Copper-resistance protein, CopA family n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G9Q8_ALIDK
copper-resistance protein, copa family
Copper-resistance protein, CopA family {ECO:0000313|EMBL:ADV00471.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCN18_13_7_16_R1_B_scaffold_700_6
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6486..7169
DNA (684bp) protein (228aa)
Two component heavy metal response transcriptional regulator, winged helix family n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G9Q7_ALIDK
two component heavy metal response transcriptional regulator
Two component heavy metal response transcriptional regulator, winged helix family {ECO:0000313|EMBL:AEB84557.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCN18_13_7_16_R1_B_scaffold_700_7
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7170..8579
DNA (1410bp) protein (470aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Heavy metal sensor kinase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TU68_ALIDB
heavy metal sensor kinase
SCN18_13_7_16_R1_B_scaffold_700_8
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8633..9259)
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2X5Z0_DELAC
Uncharacterized protein {ECO:0000313|EMBL:KEH12217.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
hypothetical protein
SCN18_13_7_16_R1_B_scaffold_700_9
SCN_Rubrivivax_15x, SCN_Rubrivivax_15x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9353..11404
DNA (2052bp) protein (684aa)
Small GTP-binding protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TZK4_ALIDB
small gtp-binding protein
Small GTP-binding protein {ECO:0000313|EMBL:ADU98551.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCN18_13_7_16_R1_B_scaffold_700_10
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11574..12053)
DNA (480bp) protein (160aa)
CHRD n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21WA4_RHOFD
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
SCN18_13_7_16_R1_B_scaffold_700_11
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12053..12679)
DNA (627bp) protein (209aa)
Chordin n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q128X7_POLSJ
chordin
Chordin {ECO:0000313|EMBL:ABE44915.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
SCN18_13_7_16_R1_B_scaffold_700_12
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12830..13243
DNA (414bp) protein (138aa)
Thioesterase superfamily protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MPD0_9BURK
Thioesterase superfamily protein {ECO:0000313|EMBL:EIK91070.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
phenylacetic acid degradation-related protein
SCN18_13_7_16_R1_B_scaffold_700_13
Hydrogenophaga sp. PBC_SCNpilot_P_inoc_Hydrogenophaga_70_12, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13251..13796
DNA (546bp) protein (182aa)
hypothetical protein id=5081144 bin=GWF1_Burkholderiales_GWF1_66_17 species=Candidatus Accumulibacter phosphatis genus=Candidatus Accumulibacter taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein
Tax=GWE1_Burkholderiales_65_30_curated
SCN18_13_7_16_R1_B_scaffold_700_14
Hydrogenophaga sp. PBC_SCNpilot_P_inoc_Hydrogenophaga_70_12, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13793..14998
DNA (1206bp) protein (402aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MQ57_9BURK
hypothetical protein
Tax=BJP_08E140C01_Burkholderiales_65_30
SCN18_13_7_16_R1_B_scaffold_700_15
SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15066..15419
DNA (354bp) protein (118aa)
Arsenate reductase {ECO:0000256|RuleBase:RU362029}; EC=1.20.4.1 {ECO:0000256|RuleBase:RU362029};; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
Arsenate reductase n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6Z733_9RHOO
arsenate reductase
SCN18_13_7_16_R1_B_scaffold_700_16
Hydrogenophaga sp. PBC_SCNpilot_P_inoc_Hydrogenophaga_70_12, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15425..16039
DNA (615bp) protein (205aa)
Chromate transporter id=1266612 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
chromate transporter
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
SCN18_13_7_16_R1_B_scaffold_700_17
Hydrogenophaga sp. PBC_SCNpilot_P_inoc_Hydrogenophaga_70_12, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16036..16632
DNA (597bp) protein (199aa)
Chromate transporter n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MUI5_9BURK
Chromate transporter {ECO:0000313|EMBL:EIK92875.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
chromate transporter
SCN18_13_7_16_R1_B_scaffold_700_18
Acidovorax sp. KKS102_CN-SCN_Acidovorax_28x, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16754..17185
DNA (432bp) protein (144aa)
Tripartite tricarboxylate transporter TctB family n=1 Tax=Polaromonas sp. CF318 RepID=J3DE46_9BURK
Tripartite tricarboxylate transporter TctB family protein {ECO:0000313|EMBL:KCB37049.1}; TaxID=1331258 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 8-296-03.;"
tripartite tricarboxylate transporter TctB family protein
SCN18_13_7_16_R1_B_scaffold_700_19
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17238..18788
DNA (1551bp) protein (517aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0HS20_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU45778.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCN18_13_7_16_R1_B_scaffold_700_20
SCNPILOT_EXPT_750_BF_Thiobacillus_SCN1_63_220, SCNPILOT_EXPT_750_BF_Thiobacillus_SCN1_63_220, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18733..20145)
DNA (1413bp) protein (471aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
Signal transduction histidine kinase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WRT2_9BURK
integral membrane sensor signal transduction histidine kinase
SCN18_13_7_16_R1_B_scaffold_700_21
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20142..20828)
DNA (687bp) protein (229aa)
transcriptional regulator n=1 Tax=Ideonella sp. B508-1 RepID=UPI000345F06E
two component transcriptional regulator
Transcriptional regulatory protein BasR {ECO:0000313|EMBL:EWS53856.1}; TaxID=1430884 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29.;"
SCN18_13_7_16_R1_B_scaffold_700_22
SCNPILOT_EXPT_750_BF_Rhodanobacter_67_8_fragment, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20825..21775)
DNA (951bp) protein (317aa)
Beta-lactamase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VSM1_9GAMM
Beta-lactamase {ECO:0000313|EMBL:EIL90212.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Zn-dependent hydrolase, glyoxylase
SCN18_13_7_16_R1_B_scaffold_700_23
SCNPILOT_CONT_750_P_Burkholderiales_64_62, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21815..22486)
DNA (672bp) protein (224aa)
Transcriptional regulator, TetR family n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W851_ACISJ
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ABM42426.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCN18_13_7_16_R1_B_scaffold_700_24
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22600..23052
DNA (453bp) protein (151aa)
3-demethylubiquinone-9 3-methyltransferase n=2 Tax=Alicycliphilus denitrificans RepID=E8TRQ5_ALIDB
3-demethylubiquinone-9 3-methyltransferase
3-demethylubiquinone-9 3-methyltransferase {ECO:0000313|EMBL:AEB85200.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCN18_13_7_16_R1_B_scaffold_700_25
SCNpilot_P_inoc_Thiobacillus_strain2_63_34, SCNpilot_P_inoc_Thiobacillus_strain2_63_34, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23052..23525
DNA (474bp) protein (158aa)
Activator of Hsp90 ATPase 1 family protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MIQ1_ACIET
activator of hsp90 ATPase 1 family protein
Activator of Hsp90 ATPase 1 family protein {ECO:0000313|EMBL:ACM33067.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCN18_13_7_16_R1_B_scaffold_700_26
SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, Bacteria

Not on your lists

23632..24333
DNA (702bp) protein (234aa)
hypothetical protein n=1 Tax=Methylosarcina fibrata RepID=UPI00037155DD
Uncharacterized protein {ECO:0000313|EMBL:CCH18836.1}; TaxID=1150864 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora lupini str. Lupac 08.;"
hypothetical protein
SCN18_13_7_16_R1_B_scaffold_700_27
CN-SCN_Lautropia_89x, CN-SCN_Lautropia_89x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24353..25021
DNA (669bp) protein (223aa)
deaminase reductase n=1 Tax=Burkholderia sp. JPY251 RepID=UPI0003778B75
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJZ61765.1}; TaxID=134537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia fungorum.;"
SCN18_13_7_16_R1_B_scaffold_700_28
SCNpilot_P_inoc_Thiobacillus_strain2_63_34, SCNpilot_P_inoc_Thiobacillus_strain2_63_34, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25033..25440
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DNS8_BRAJP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHY56445.1}; TaxID=476282 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum SEMIA 5079.;"
SCN18_13_7_16_R1_B_scaffold_700_29
SCNPILOT_SOLID2_TRIM150_Rhodanobacter_68_151, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25538..26185
DNA (648bp) protein (216aa)
glutathione S-transferase protein (EC:2.5.1.18)
Glutathione S-transferase protein {ECO:0000313|EMBL:AJD41233.1}; EC=2.5.1.18 {ECO:0000313|EMBL:AJD41233.1};; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
Glutathione S-transferase n=1 Tax=Asticcacaulis sp. AC466 RepID=V4P4E0_9CAUL
SCN18_13_7_16_R1_B_scaffold_700_30
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26231..26716
DNA (486bp) protein (162aa)
3-demethylubiquinone-9 3-methyltransferase n=1 Tax=Halomonas anticariensis FP35 = DSM 16096 RepID=S2KQ50_9GAMM
3-demethylubiquinone-9 3-methyltransferase {ECO:0000313|EMBL:EPC04010.1}; TaxID=1121939 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas anticariensis FP35 = DSM 16096.;"
3-demethylubiquinone-9 3-methyltransferase
Displaying items 1-30 of 39 in total

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