ggKbase home page

SCN18_13_7_16_R1_B_scaffold_964

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_13_7_16_R1_B_scaffold_964_1
CN-SCN_Comamonas_56x, CN-SCN_Comamonas_56x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..629
DNA (627bp) protein (209aa)
Putative uncharacterized protein (Fragment) n=1 Tax=Acidovorax sp. NO-1 RepID=H0BTF0_9BURK
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCN18_13_7_16_R1_B_scaffold_964_2
CN-SCN_Comamonas_56x, CN-SCN_Comamonas_56x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

759..1058
DNA (300bp) protein (100aa)
Putative transcriptional regulator n=1 Tax=Acidovorax sp. KKS102 RepID=K0I9U6_9BURK
transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:AFU45876.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCN18_13_7_16_R1_B_scaffold_964_3
unknown

Not on your lists

1055..1243
DNA (189bp) protein (63aa)

This feature has no annotations

SCN18_13_7_16_R1_B_scaffold_964_4
Acidovorax sp. KKS102_CN-SCN_Acidovorax_28x, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1203..1649)
DNA (447bp) protein (149aa)
Thioesterase superfamily protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0IDZ9_9BURK
thioesterase superfamily protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCN18_13_7_16_R1_B_scaffold_964_5
SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1829..3862
DNA (2034bp) protein (678aa)
transketolase (EC:2.2.1.1)
transketolase id=12551754 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
Transketolase {ECO:0000313|EMBL:EGI75701.1}; TaxID=887062 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis ATCC 19624.;"
SCN18_13_7_16_R1_B_scaffold_964_6
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3948..4949
DNA (1002bp) protein (334aa)
glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
Glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TVY7_ACIAC
SCN18_13_7_16_R1_B_scaffold_964_7
SCN_Rubrivivax_15x, SCN_Rubrivivax_15x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5027..5428
DNA (402bp) protein (134aa)
Fe-S protein n=1 Tax=Acidovorax avenae RepID=UPI00037ACDDE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADX48488.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
SCN18_13_7_16_R1_B_scaffold_964_8
Hydrogenophaga sp. PBC_SCNpilot_P_inoc_Hydrogenophaga_70_12, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5773..6471
DNA (699bp) protein (233aa)
Uncharacterized membrane protein yjbE n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YD27_9BURK
integral membrane protein TerC
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCN18_13_7_16_R1_B_scaffold_964_9
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6504..6839
DNA (336bp) protein (112aa)
Putative membrane protein n=1 Tax=Variovorax sp. CF313 RepID=J2KHP1_9BURK
Membrane protein {ECO:0000313|EMBL:KJA12284.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
hypothetical protein
SCN18_13_7_16_R1_B_scaffold_964_10
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6840..8576)
DNA (1737bp) protein (579aa)
Peptidase M48 Ste24p n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0QAZ7_ACIAP
peptidase M48 Ste24p
Peptidase M48 Ste24p {ECO:0000313|EMBL:ADX48492.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
SCN18_13_7_16_R1_B_scaffold_964_11
CN-SCN_Acidovorax_22x, CN-SCN_Acidovorax_22x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8654..9166
DNA (513bp) protein (171aa)
Cyclic pyranopterin monophosphate synthase accessory protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WD17_ACISJ
molybdenum cofactor biosynthesis protein C
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
SCN18_13_7_16_R1_B_scaffold_964_12
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9170..10702)
DNA (1533bp) protein (511aa)
O-antigen polymerase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q122I7_POLSJ
O-antigen polymerase
O-antigen polymerase {ECO:0000313|EMBL:ABE46555.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
SCN18_13_7_16_R1_B_scaffold_964_13
CN-SCN_Rubrivivax_131x, CN-SCN_Rubrivivax_131x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10752..11384)
DNA (633bp) protein (211aa)
FHA domain containing protein n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21RG4_RHOFD
FHA domain-containing protein
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCN18_13_7_16_R1_B_scaffold_964_14
CN-SCN_Rubrivivax_131x, CN-SCN_Rubrivivax_131x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11490..12275)
DNA (786bp) protein (262aa)
serine/threonine specific protein phosphatase (EC:3.1.3.16)
Serine/threonine specific protein phosphatase (Putative) {ECO:0000313|EMBL:ABM93030.1}; EC=3.1.3.16 {ECO:0000313|EMBL:ABM93030.1};; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
Serine/threonine specific protein phosphatase (Putative) n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SBU1_METPP
SCN18_13_7_16_R1_B_scaffold_964_15
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12296..13003)
DNA (708bp) protein (236aa)
membrane protein n=1 Tax=Variovorax paradoxus RepID=UPI000363AB85
integral membrane protein TerC
Tax=RIFCSPHIGHO2_12_FULL_Curvibacter_63_18_curated
SCN18_13_7_16_R1_B_scaffold_964_16
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13109..14002)
DNA (894bp) protein (298aa)
Succinyl-CoA ligase [ADP-forming] subunit alpha {ECO:0000256|RuleBase:RU000699}; EC=6.2.1.5 {ECO:0000256|RuleBase:RU000699};; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
succinyl-CoA synthetase subunit alpha (EC:6.2.1.5)
Succinyl-CoA ligase [ADP-forming] subunit alpha n=2 Tax=Delftia acidovorans RepID=S2W9V2_DELAC
SCN18_13_7_16_R1_B_scaffold_964_17
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14058..15218)
DNA (1161bp) protein (387aa)
Succinyl-CoA ligase [ADP-forming] subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; EC=6.2.1.5 {ECO:0000256|HAMAP-Rule:MF_00558};; Succinyl-CoA synthetase subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
sucC; succinyl-CoA synthetase subunit beta (EC:6.2.1.5)
Succinyl-CoA ligase [ADP-forming] subunit beta n=2 Tax=Delftia acidovorans RepID=S2WDK3_DELAC
SCN18_13_7_16_R1_B_scaffold_964_18
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15404..16318
DNA (915bp) protein (305aa)
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|HAMAP-Rule:MF_01110, ECO:0000256|SAAS:SAAS00015955}; Short=AGPR {ECO:0000256|HAMAP-Rule:MF_01110};; EC=1.2.1.38 {ECO:0000256|HAMAP-Rule:MF_01110, ECO:0000256|SAAS:SAAS00015955};; N-acetyl-glutamate semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01110}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38)
N-acetyl-gamma-glutamyl-phosphate reductase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035F196C
SCN18_13_7_16_R1_B_scaffold_964_19
unknown

Not on your lists

comp(16328..16897)
DNA (570bp) protein (190aa)

This feature has no annotations

SCN18_13_7_16_R1_B_scaffold_964_20
Hydrogenophaga sp. PBC_SCNpilot_P_inoc_Hydrogenophaga_70_12, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17093..17575)
DNA (483bp) protein (161aa)
Regulatory protein RecX n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MG14_9BURK
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
recX; RecX family regulatory protein
SCN18_13_7_16_R1_B_scaffold_964_21
Acidovorax sp. KKS102_CN-SCN_Acidovorax_28x, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(17580..18635)
DNA (1056bp) protein (352aa)
Protein RecA n=2 Tax=Alicycliphilus denitrificans RepID=E8TX26_ALIDB
reca protein
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCN18_13_7_16_R1_B_scaffold_964_22
CN-SCN_Comamonas_56x, CN-SCN_Comamonas_56x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18778..19257
DNA (480bp) protein (160aa)
MarR family transcriptional regulator n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037A6DD6
Regulatory protein MarR {ECO:0000313|EMBL:GAD23417.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
MarR family transcriptional regulator
SCN18_13_7_16_R1_B_scaffold_964_23
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19324..19998
DNA (675bp) protein (225aa)
transcriptional regulator n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037114F8
response regulator receiver
Response regulator receiver {ECO:0000313|EMBL:ADV01915.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCN18_13_7_16_R1_B_scaffold_964_24
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20056..21513
DNA (1458bp) protein (486aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0QA83_ACIAP
integral membrane sensor signal transduction histidine kinase
SCN18_13_7_16_R1_B_scaffold_964_25
Hydrogenophaga sp. PBC_SCNpilot_P_inoc_Hydrogenophaga_70_12, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21476..22150)
DNA (675bp) protein (225aa)
Glutathione S-transferase-like protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y2Y4_RAMTT
glutathione S-transferase
Glutathione S-transferase-like protein {ECO:0000313|EMBL:AEG94864.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCN18_13_7_16_R1_B_scaffold_964_26
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22226..22879)
DNA (654bp) protein (218aa)
Sporulation domain-containing protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TX00_ALIDB
sporulation domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCN18_13_7_16_R1_B_scaffold_964_27
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22879..23820)
DNA (942bp) protein (314aa)
Candidate bifunctional protein (BirA) : transcriptional regulator (Biotin operon repressor), BirA family Biotin--[acetyl-CoA-carboxylase] synthetase (Biotin--protein ligase) n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y2Y6_RAMTT
birA; bifunctional Biotin operon transcriptional regulator/Biotin--[acetyl-CoA-carboxylase] synthetase
Candidate bifunctional protein (BirA) : transcriptional regulator (Biotin operon repressor), BirA family Biotin--[acetyl-CoA-carboxylase] synthetase (Biotin--protein ligase) {ECO:0000313|EMBL:AEG94866.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCN18_13_7_16_R1_B_scaffold_964_28
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23828..24376)
DNA (549bp) protein (183aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI0002D82829
nuclear protein SET
Nuclear protein SET {ECO:0000313|EMBL:ABM35163.1}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
SCN18_13_7_16_R1_B_scaffold_964_29
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24456..27473
DNA (3018bp) protein (1006aa)
DNA topoisomerase {ECO:0000256|SAAS:SAAS00046608}; EC=5.99.1.2 {ECO:0000256|SAAS:SAAS00046608};; TaxID=1458275 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis str. Niagara R.;"
DNA topoisomerase III n=2 Tax=Alicycliphilus denitrificans RepID=E8TWZ7_ALIDB
DNA topoisomerase iii
SCN18_13_7_16_R1_B_scaffold_964_30
SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27487..28470
DNA (984bp) protein (328aa)
hypothetical protein n=1 Tax=Brachymonas chironomi RepID=UPI00036C5DC8
patatin
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
Displaying items 1-30 of 45 in total

View Taxonomy