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SCN18_13_7_16_R1_B_scaffold_1778

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_13_7_16_R1_B_scaffold_1778_1
Hydrogenophaga sp. PBC_SCNpilot_P_inoc_Hydrogenophaga_70_12, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2..517
DNA (516bp) protein (172aa)
methionine synthase (EC:2.1.1.13)
Methionine synthase (B12-dependent) {ECO:0000313|EMBL:ABM40402.1}; EC=2.1.1.13 {ECO:0000313|EMBL:ABM40402.1};; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
Methionine synthase (B12-dependent) n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W2C7_ACISJ
SCN18_13_7_16_R1_B_scaffold_1778_2
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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617..874
DNA (258bp) protein (86aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI00030DD43B
Uncharacterized protein {ECO:0000313|EMBL:KIN90029.1}; TaxID=1572758 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. SWB20.;"
hypothetical protein
SCN18_13_7_16_R1_B_scaffold_1778_3
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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843..1178
DNA (336bp) protein (112aa)
XRE family transcriptional regulator n=1 Tax=Thauera phenylacetica B4P RepID=N6ZUK9_9RHOO
Helix-turn-helix family protein {ECO:0000313|EMBL:KIN90199.1}; TaxID=1572758 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. SWB20.;"
transcriptional regulator
SCN18_13_7_16_R1_B_scaffold_1778_4
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1269..1766
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Massilia timonae CCUG 45783 RepID=K9DUQ7_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EKU81075.1}; TaxID=883126 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia timonae CCUG 45783.;"
hypothetical protein
SCN18_13_7_16_R1_B_scaffold_1778_5
SCN_Thiomonas_15x, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1822..3534
DNA (1713bp) protein (571aa)
choline dehydrogenase (EC:1.1.99.1)
Choline dehydrogenase {ECO:0000313|EMBL:ADG30127.1}; EC=1.1.99.1 {ECO:0000313|EMBL:ADG30127.1};; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
choline dehydrogenase n=1 Tax=Cupriavidus sp. WS RepID=UPI000377C438
SCN18_13_7_16_R1_B_scaffold_1778_6
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3524..4417)
DNA (894bp) protein (298aa)
LysR family transcriptional regulator id=5083352 bin=GWF1_Burkholderiales_GWF1_66_17 species=Mesorhizobium sp. STM 4661 genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
transcriptional regulator, LysR family
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
SCN18_13_7_16_R1_B_scaffold_1778_7
SCN_Rubrivivax_15x, SCN_Rubrivivax_15x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4578..5441
DNA (864bp) protein (288aa)
type 11 methyltransferase id=5083351 bin=GWF1_Burkholderiales_GWF1_66_17 species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
UbiE/COQ5 methyltransferase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
SCN18_13_7_16_R1_B_scaffold_1778_8
Acidovorax sp. KKS102_CN-SCN_Acidovorax_28x, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5565..6905
DNA (1341bp) protein (447aa)
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00581, ECO:0000256|SAAS:SAAS00009500}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00581, ECO:0000256|SAAS:SAAS00009947};; Citrulline--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00581}; TaxID=665946 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria.;" source="Neisseria sp. GT4A_CT1.;"
argG; argininosuccinate synthase (EC:6.3.4.5)
argininosuccinate synthase n=1 Tax=Brachymonas chironomi RepID=UPI000382508A
SCN18_13_7_16_R1_B_scaffold_1778_9
SCNpilot_P_inoc_Acidovorax_64_34, SCNpilot_P_inoc_Acidovorax_64_34, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7293..8051
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HVL5_RUBGI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL97052.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
SCN18_13_7_16_R1_B_scaffold_1778_10
Enterobacter cloacae_SCNPILOT_CONT_500_P_Enterobacter_55_6.1, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8057..8716)
DNA (660bp) protein (220aa)
ChaC-like protein n=1 Tax=Burkholderia gladioli (strain BSR3) RepID=F2LK41_BURGS
putative cation transport protein ChaC
Putative cation transport protein ChaC {ECO:0000313|EMBL:AHG64597.1}; TaxID=1247726 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella mimigardefordensis DPN7.;"
SCN18_13_7_16_R1_B_scaffold_1778_11
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8754..9848)
DNA (1095bp) protein (365aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU000608}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU000608};; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
Alanine racemase n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y3D8_RAMTT
alr2; alanine racemase
SCN18_13_7_16_R1_B_scaffold_1778_12
CN-SCN_Acidovorax_22x, CN-SCN_Acidovorax_22x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10010..11296
DNA (1287bp) protein (429aa)
Lysophospholipid transporter LplT id=1303846 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
major facilitator superfamily protein
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
SCN18_13_7_16_R1_B_scaffold_1778_13
CN-SCN_Acidovorax_22x, CN-SCN_Acidovorax_22x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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11412..12125
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q221R5_RHOFD
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
Displaying 13 items

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