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SCN18_13_7_16_R2_B_scaffold_4916

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Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_13_7_16_R2_B_scaffold_4916_1
SCNPILOT_EXPT_1000_BF_Microbacterium_69_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

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comp(2..1054)
DNA (1053bp) protein (351aa)
hypothetical protein n=1 Tax=Nocardioides sp. Iso805N RepID=UPI000381B797
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ADU48059.1}; Flags: Precursor;; TaxID=710696 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium calvum (strain ATCC 23552 / DSM 43043 / JCM 3097 /; NBRC 12989 / 7 KIP).;"
SCN18_13_7_16_R2_B_scaffold_4916_2
unknown

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1414..1761
DNA (348bp) protein (116aa)

This feature has no annotations

SCN18_13_7_16_R2_B_scaffold_4916_3
SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13, SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13, SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13, Actinobacteria, Actinobacteria, Bacteria

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comp(1793..2863)
DNA (1071bp) protein (357aa)
excinuclease ABC subunit A n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B6AF1D
excinuclease ABC subunit A
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=2045 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Pimelobacter.;" source="Nocardioides simplex (Arthrobacter simplex).;"
SCN18_13_7_16_R2_B_scaffold_4916_4
CN-SCN_Microbacterium_200x, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

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comp(4928..5308)
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Mycobacterium sp. (strain JDM601) RepID=F5YV73_MYCSD
Uncharacterized protein {ECO:0000313|EMBL:KEF99522.1}; TaxID=1324269 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex.;" source="Mycobacterium sp. TKK-01-0059.;"
hypothetical protein
SCN18_13_7_16_R2_B_scaffold_4916_5
Tetrasphaera australiensis, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(5305..5496)
DNA (192bp) protein (64aa)
CopG domain protein DNA-binding domain protein n=1 Tax=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) RepID=A6WBF9_KINRD
CopG domain protein DNA-binding domain protein {ECO:0000313|EMBL:CCH74962.1}; TaxID=1193182 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera australiensis Ben110.;"
DNA-binding domain-containing protein
SCN18_13_7_16_R2_B_scaffold_4916_6
SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13, SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13, SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13, Actinobacteria, Actinobacteria, Bacteria

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comp(5606..6283)
DNA (678bp) protein (226aa)
Uracil-DNA glycosylase 1 (EC:3.2.2.27)
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780};; TaxID=1303692 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces fulvissimus DSM 40593.;"
uracil-DNA glycosylase n=1 Tax=Curtobacterium ginsengisoli RepID=UPI0003B3C23A
SCN18_13_7_16_R2_B_scaffold_4916_7
Streptomyces lividans, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(6351..6593)
DNA (243bp) protein (81aa)
Putative LysR-family transcriptional regulator n=1 Tax=Streptomyces lividans 1326 RepID=S1SDC5_STRLI
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AIJ13762.1}; TaxID=457428 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces lividans TK24.;"
Displaying 7 items

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