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SCN18_14_9_16_R1_B_scaffold_2055

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R1_B_scaffold_2055_1
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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3..173
DNA (171bp) protein (57aa)
Serine/threonine-protein kinase transcriptional regulatory protein {ECO:0000313|EMBL:AKF04186.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandaracinus amylolyticus.;"
hypothetical protein
SCN18_14_9_16_R1_B_scaffold_2055_2
CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, Acidobacteria

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194..1234
DNA (1041bp) protein (347aa)
Sugar ABC transporter substrate-binding protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4Y964_SORCE
sugar ABC transporter substrate-binding protein
Sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:AGP42027.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
SCN18_14_9_16_R1_B_scaffold_2055_3
CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, Acidobacteria

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1231..2778
DNA (1548bp) protein (516aa)
Sugar ABC transporter ATP-binding protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9GMT4_SORC5
sugar ABC transporter ATP-binding protein
Sugar ABC transporter ATP-binding protein {ECO:0000313|EMBL:CAN93482.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
SCN18_14_9_16_R1_B_scaffold_2055_4
CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, Acidobacteria

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2775..3734
DNA (960bp) protein (320aa)
Transport system permease protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9GMT7_SORC5
ABC transporter permease
Transport system permease protein {ECO:0000313|EMBL:CAN93483.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
SCN18_14_9_16_R1_B_scaffold_2055_5
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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3800..5476
DNA (1677bp) protein (559aa)
Putative sensory box histidine kinase/response regulator n=1 Tax=Myxococcus xanthus (strain DK 1622) RepID=Q1D9R7_MYXXD
Histidine kinase {ECO:0000313|EMBL:AKF80703.1}; TaxID=1334629 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fulvus 124B02.;"
sensory box histidine kinase/response regulator
SCN18_14_9_16_R1_B_scaffold_2055_6
SCNPILOT_CONT_500_BF_Cellulomonas_73_12_partial, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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5528..6253
DNA (726bp) protein (242aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4YGK0_SORCE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP41998.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
SCN18_14_9_16_R1_B_scaffold_2055_7
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6342..7217)
DNA (876bp) protein (292aa)
folD1; methenyltetrahydrofolate cyclohydrolase (EC:3.5.4.9)
Bifunctional protein FolD n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=FOLD_SORC5
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
SCN18_14_9_16_R1_B_scaffold_2055_8
SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7386..8288)
DNA (903bp) protein (301aa)
Chromosome partitioning protein ParB n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9GIR3_SORC5
Marine sediment metagenome DNA, contig: S06H3_L00262 {ECO:0000313|EMBL:GAI06487.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
parB; chromosome partitioning protein ParB
SCN18_14_9_16_R1_B_scaffold_2055_9
CN-SCN_Mesorhizobium_20x, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8288..9121)
DNA (834bp) protein (278aa)
Partition protein, ParA homolog n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9GIR5_SORC5
Chromosome (Plasmid) partitioning protein ParA / Sporulation initiation inhibitor protein Soj {ECO:0000313|EMBL:EYF00876.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
parA2; partition protein, ParA-like protein
SCN18_14_9_16_R1_B_scaffold_2055_10
unknown

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comp(9370..9546)
DNA (177bp) protein (59aa)

This feature has no annotations

SCN18_14_9_16_R1_B_scaffold_2055_11
unknown

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9645..9833
DNA (189bp) protein (63aa)

This feature has no annotations

SCN18_14_9_16_R1_B_scaffold_2055_12
unknown

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comp(10142..10495)
DNA (354bp) protein (118aa)

This feature has no annotations

SCN18_14_9_16_R1_B_scaffold_2055_13
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10764..11423
DNA (660bp) protein (220aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
tig; trigger factor (EC:5.2.1.8)
Trigger factor n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9GIS1_SORC5
SCN18_14_9_16_R1_B_scaffold_2055_14
CN-SCN_Erythrobacter_14x, CN-SCN_Erythrobacter_14x, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11441..11989
DNA (549bp) protein (183aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
Trigger factor n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XV64_SORCE
hypothetical protein
SCN18_14_9_16_R1_B_scaffold_2055_15
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11993..12658
DNA (666bp) protein (222aa)
clpP2; endopeptidase Clp (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9GIS3_SORC5
SCN18_14_9_16_R1_B_scaffold_2055_16
CN-SCN_Arenimonas_307x, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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12838..13392
DNA (555bp) protein (185aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9GIS5_SORC5
clpX; ATP-dependent protease ATP-binding subunit ClpX
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
Displaying 16 items

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