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SCN18_14_9_16_R1_B_scaffold_3884

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Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R1_B_scaffold_3884_1
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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200..1126
DNA (927bp) protein (309aa)
Cation diffusion facilitator family transporter n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CBP2_9RHIZ
Cation diffusion facilitator family transporter {ECO:0000313|EMBL:EYR83473.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cation diffusion facilitator family transporter
SCN18_14_9_16_R1_B_scaffold_3884_2
CN-SCN_Mesorhizobium_20x, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1175..1753)
DNA (579bp) protein (193aa)
Urease accessory protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D0M3_9RHIZ
Urease accessory protein {ECO:0000313|EMBL:EYR83471.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hupE; Protein HupE precursor
SCN18_14_9_16_R1_B_scaffold_3884_3
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2023..2601
DNA (579bp) protein (193aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
clpP3; ATP-dependent Clp protease proteolytic subunit (EC:3.4.21.92)
ATP-dependent Clp protease ClpP n=1 Tax=Rhizobium giardinii RepID=UPI00037E0DE2
SCN18_14_9_16_R1_B_scaffold_3884_4
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2993..4699
DNA (1707bp) protein (569aa)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_00572}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
2-isopropylmalate synthase (EC:2.3.3.13)
2-isopropylmalate synthase n=1 Tax=Rhizobium meliloti RepID=UPI0003756375
SCN18_14_9_16_R1_B_scaffold_3884_5
SCN_Thiobacillus_53x, SCN_Thiobacillus_53x, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4800..5654)
DNA (855bp) protein (285aa)
Putative transmembrane anti-sigma factor n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CCR0_9RHIZ
Putative transmembrane transcriptional regulator {ECO:0000313|EMBL:EYR82251.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transmembrane anti-sigma factor
SCN18_14_9_16_R1_B_scaffold_3884_6
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5657..6175)
DNA (519bp) protein (173aa)
RNA polymerase sigma70 n=1 Tax=Rhizobium giardinii RepID=UPI0003656CAC
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:EYR82250.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
sige3; RNA polymerase sigma-E factor
SCN18_14_9_16_R1_B_scaffold_3884_7
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6338..6904)
DNA (567bp) protein (189aa)
hypothetical protein n=1 Tax=Rhizobium mongolense RepID=UPI0003B68F1F
Uncharacterized protein {ECO:0000313|EMBL:EYR82249.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
tetratricopeptide repeat-containing protein
Displaying 7 items

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