ggKbase home page

SCN18_14_9_16_R1_B_scaffold_1729

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R1_B_scaffold_1729_1
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..189)
DNA (189bp) protein (63aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C0A8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR82241.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Conserved hypothetical protein
SCN18_14_9_16_R1_B_scaffold_1729_2
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(203..1216)
DNA (1014bp) protein (338aa)
Putative methanol dehydrogenase regulator MoxR-like protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EID1_9RHIZ
Putative methanol dehydrogenase regulator MoxR-like protein {ECO:0000313|EMBL:EYR82240.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
MoxR-like ATPase protein
SCN18_14_9_16_R1_B_scaffold_1729_3
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1390..2007
DNA (618bp) protein (206aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003609FD3
Uncharacterized protein {ECO:0000313|EMBL:KEQ08873.1}; TaxID=1509405 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R1-200B4.;"
hypothetical protein
SCN18_14_9_16_R1_B_scaffold_1729_4
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2004..2636
DNA (633bp) protein (211aa)
Nudix hydrolase NudL {ECO:0000313|EMBL:EYR78980.1}; EC=3.6.1.- {ECO:0000313|EMBL:EYR78980.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Nudix hydrolase NudL n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EP97_9RHIZ
NTP pyrophosphohydrolase, MutT family
SCN18_14_9_16_R1_B_scaffold_1729_5
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2633..3892
DNA (1260bp) protein (420aa)
tRNA nucleotidyltransferase/poly(A) polymerase {ECO:0000313|EMBL:EYR78981.1}; EC=2.7.7.19 {ECO:0000313|EMBL:EYR78981.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
tRNA nucleotidyltransferase/poly(A) polymerase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CRT7_9RHIZ
polynucleotide adenylyltransferase
SCN18_14_9_16_R1_B_scaffold_1729_6
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4075..4266)
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWI8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR78982.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCN18_14_9_16_R1_B_scaffold_1729_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4393..4644)
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CME4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR78983.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCN18_14_9_16_R1_B_scaffold_1729_8
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4726..5637)
DNA (912bp) protein (304aa)
Oxygen-dependent coproporphyrinogen-III oxidase {ECO:0000256|HAMAP-Rule:MF_00333}; Short=CPO {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coprogen oxidase {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coproporphyrinogenase {ECO:0000256|HAMAP-Rule:MF_00333};; EC=1.3.3.3 {ECO:0000256|HAMAP-Rule:MF_00333};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
fbcF2; coproporphyrinogen III oxidase (EC:1.3.3.3)
Coproporphyrinogen-III oxidase, aerobic n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C6L8_9RHIZ
SCN18_14_9_16_R1_B_scaffold_1729_9
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5864..6121
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EPA3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR78985.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCN18_14_9_16_R1_B_scaffold_1729_10
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6357..7535
DNA (1179bp) protein (393aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CME8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR78988.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
protein of unassigned function
SCN18_14_9_16_R1_B_scaffold_1729_11
SCNpilot_P_inoc_Acidovorax_64_34, SCNpilot_P_inoc_Acidovorax_64_34, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7630..8100)
DNA (471bp) protein (157aa)
Redox-sensitive transcriptional activator SoxR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C6M3_9RHIZ
Redox-sensitive transcriptional activator SoxR {ECO:0000313|EMBL:EYR78989.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
soxR; Redox-sensitive transcriptional activator SoxR
SCN18_14_9_16_R1_B_scaffold_1729_12
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8175..8744
DNA (570bp) protein (190aa)
NADPH-dependent FMN reductase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EPA7_9RHIZ
NADPH-dependent FMN reductase {ECO:0000313|EMBL:EYR78990.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
NADPH-dependent FMN reductase
SCN18_14_9_16_R1_B_scaffold_1729_13
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8777..9238)
DNA (462bp) protein (154aa)
tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWJ6_9RHIZ
tRNA/rRNA methyltransferase
SCN18_14_9_16_R1_B_scaffold_1729_14
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9585..11438
DNA (1854bp) protein (618aa)
Uncharacterized ABC transporter ATP-binding protein HI_1051 n=1 Tax=Rhizobium sp. RepID=L0NG67_RHISP
ABC-type multidrug transport system ATPase and permease component {ECO:0000313|EMBL:EYR78993.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter-like protein
SCN18_14_9_16_R1_B_scaffold_1729_15
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11543..11815
DNA (273bp) protein (91aa)
Addiction module antidote protein n=1 Tax=Rhizobium sp. Pop5 RepID=K0VXA4_9RHIZ
Addiction module antidote protein {ECO:0000313|EMBL:EJZ19708.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
addiction module antidote protein, CC2985 family
SCN18_14_9_16_R1_B_scaffold_1729_16
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

11812..12123
DNA (312bp) protein (104aa)
Plasmid stabilization system protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D953_SINAD
plasmid stabilization system protein
Tax=RIFCSPLOWO2_02_FULL_Elusimicrobia_39_32_curated
SCN18_14_9_16_R1_B_scaffold_1729_17
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12187..12933
DNA (747bp) protein (249aa)
ABC transporter permease n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C824_9RHIZ
ABC-type multidrug transport system ATPase and permease component {ECO:0000313|EMBL:EYR78994.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
vcaM; multidrug ABC transporter ATP-binding protein
Displaying 17 items

View Taxonomy