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SCN18_14_9_16_R1_B_scaffold_2087

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R1_B_scaffold_2087_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..108
DNA (108bp) protein (36aa)
Putative rhizopine catabolism regulatory protein MocR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVW6_9RHIZ
Putative rhizopine catabolism regulatory protein MocR {ECO:0000313|EMBL:EYR83680.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCN18_14_9_16_R1_B_scaffold_2087_2
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(170..877)
DNA (708bp) protein (236aa)
GMP synthase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ETB3_9RHIZ
GMP synthase {ECO:0000313|EMBL:EYR83681.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glutamine amidotransferase
SCN18_14_9_16_R1_B_scaffold_2087_3
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(948..1376)
DNA (429bp) protein (143aa)
Fucose dissimilation pathway protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CRF4_9RHIZ
Fucose dissimilation pathway protein {ECO:0000313|EMBL:EYR83683.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transporter
SCN18_14_9_16_R1_B_scaffold_2087_4
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1378..2607)
DNA (1230bp) protein (410aa)
Sugar transcriptional regulator protein, ROK family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D0F1_9RHIZ
Sugar transcriptional regulator protein, ROK family {ECO:0000313|EMBL:EYR83684.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
frcR; transcriptional regulator ROK family
SCN18_14_9_16_R1_B_scaffold_2087_5
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2890..3915
DNA (1026bp) protein (342aa)
Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVW2_9RHIZ
ABC-type sugar transport system periplasmic component {ECO:0000313|EMBL:EYR83685.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
periplasmic binding ABC transporter protein
SCN18_14_9_16_R1_B_scaffold_2087_6
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4183..5265
DNA (1083bp) protein (361aa)
Ribose transport system permease protein RbsC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CHM6_9RHIZ
Ribose transport system permease protein RbsC {ECO:0000313|EMBL:EYR84048.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
frcC; fructose transport system permease protein
SCN18_14_9_16_R1_B_scaffold_2087_7
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5265..6041
DNA (777bp) protein (259aa)
Ribose import ATP-binding protein RbsA 1 {ECO:0000313|EMBL:EYR84047.1}; EC=3.6.3.17 {ECO:0000313|EMBL:EYR84047.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Ribose import ATP-binding protein RbsA 1 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EYC8_9RHIZ
sugar ABC transporter ATP binding protein
SCN18_14_9_16_R1_B_scaffold_2087_8
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6203..6661
DNA (459bp) protein (153aa)
Putative fructose transport system kinase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D233_9RHIZ
Putative fructose transport system kinase {ECO:0000313|EMBL:EYR84046.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Panthothenate kinase
SCN18_14_9_16_R1_B_scaffold_2087_9
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6723..7763
DNA (1041bp) protein (347aa)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00219, ECO:0000256|RuleBase:RU003440}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00219};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00219, ECO:0000256|RuleBase:RU003440};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Dihydroorotase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D6L1_9RHIZ
dihydroorotase, homodimeric type
SCN18_14_9_16_R1_B_scaffold_2087_10
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7795..8556)
DNA (762bp) protein (254aa)
cAMP-binding protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXS4_9RHIZ
cAMP-binding protein {ECO:0000313|EMBL:EYR84044.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
fixK; Fumarate and nitrate reduction regulatory protein
SCN18_14_9_16_R1_B_scaffold_2087_11
SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8744..9142
DNA (399bp) protein (133aa)
Uncharacterized protein {ECO:0000313|EMBL:EYR84043.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCN18_14_9_16_R1_B_scaffold_2087_12
CN-SCN_Mesorhizobium_20x, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9133..9582)
DNA (450bp) protein (150aa)
DoxX family protein n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UF54_SINMW
Putative membrane protein {ECO:0000313|EMBL:EYR84042.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
DoxX family protein
SCN18_14_9_16_R1_B_scaffold_2087_13
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9762..10061
DNA (300bp) protein (100aa)
SelT/selW/selH selenoprotein domain-containing protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EVN8_9RHIZ
SelT/selW/selH selenoprotein domain-containing protein {ECO:0000313|EMBL:EYR84041.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCN18_14_9_16_R1_B_scaffold_2087_14
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10117..10536)
DNA (420bp) protein (140aa)
BA14K-like protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CE92_9RHIZ
BA14K-like protein {ECO:0000313|EMBL:EYR84040.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCN18_14_9_16_R1_B_scaffold_2087_15
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10686..11258
DNA (573bp) protein (191aa)
Phosphomannomutase NoeK {ECO:0000313|EMBL:EYR84039.1}; EC=5.4.2.8 {ECO:0000313|EMBL:EYR84039.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
manB; Phosphomannomutase (EC:5.4.2.8)
Phosphomannomutase NoeK n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CU64_9RHIZ
Displaying 15 items

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