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SCN18_14_9_16_R1_B_scaffold_2203

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R1_B_scaffold_2203_1
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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23..1375
DNA (1353bp) protein (451aa)
Glutamate dehydrogenase/leucine dehydrogenase (EC:1.4.1.4)
NADP-specific glutamate dehydrogenase Gdh n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CW77_9RHIZ
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCN18_14_9_16_R1_B_scaffold_2203_2
SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2069..2494)
DNA (426bp) protein (142aa)
Nucleoside diphosphate kinase regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CGQ2_9RHIZ
Nucleoside diphosphate kinase regulator {ECO:0000313|EMBL:EYR80381.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
nucleoside diphosphate kinase regulator
SCN18_14_9_16_R1_B_scaffold_2203_3
SCNPILOT_SOLID2_TRIM150_Rhizobiales_67_9, SCNPILOT_SOLID2_TRIM150_Rhizobiales_67_9, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2851..3453
DNA (603bp) protein (201aa)
Carbonic anhydrase {ECO:0000256|RuleBase:RU003956}; EC=4.2.1.1 {ECO:0000256|RuleBase:RU003956};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Carbonic anhydrase 2 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWT8_9RHIZ
carbonic anhydrase family protein
SCN18_14_9_16_R1_B_scaffold_2203_4
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3457..3819
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D5P5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80379.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCN18_14_9_16_R1_B_scaffold_2203_5
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3914..5080
DNA (1167bp) protein (389aa)
Cystathionine gamma-synthase MetB {ECO:0000313|EMBL:EYR80378.1}; EC=2.5.1.48 {ECO:0000313|EMBL:EYR80378.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cystathionine gamma-synthase (EC:2.5.1.48)
Cystathionine gamma-synthase MetB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D141_9RHIZ
SCN18_14_9_16_R1_B_scaffold_2203_6
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5100..5804
DNA (705bp) protein (235aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EXR2_9RHIZ
5,10-methenyltetrahydrofolate synthetase
SCN18_14_9_16_R1_B_scaffold_2203_7
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5768..7045)
DNA (1278bp) protein (426aa)
Major facilitator superfamily protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CGP7_9RHIZ
Major facilitator superfamily protein {ECO:0000313|EMBL:EYR80376.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
inner membrane transport protein YeaN
SCN18_14_9_16_R1_B_scaffold_2203_8
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7042..7719)
DNA (678bp) protein (226aa)
Putative transcriptional regulator protein, GntR family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWT4_9RHIZ
Putative transcriptional regulator protein, GntR family {ECO:0000313|EMBL:EYR80375.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
GntR family transcriptional regulator
SCN18_14_9_16_R1_B_scaffold_2203_9
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8125..9156)
DNA (1032bp) protein (344aa)
Proline racemase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EXQ5_9RHIZ
Proline racemase {ECO:0000313|EMBL:EYR80367.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
proline racemase
SCN18_14_9_16_R1_B_scaffold_2203_10
SCNpilot_P_inoc_Rhodobacter_64_50, SCNpilot_P_inoc_Rhodobacter_64_50, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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9324..9989
DNA (666bp) protein (222aa)
GntR family transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CGN8_9RHIZ
GntR family transcriptional regulator {ECO:0000313|EMBL:EYR80366.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative transcriptional regulator
SCN18_14_9_16_R1_B_scaffold_2203_11
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10128..10832
DNA (705bp) protein (235aa)
GntR family transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ETA8_9RHIZ
GntR family transcriptional regulator {ECO:0000313|EMBL:EYR80304.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
AsnC family transcriptional regulator
SCN18_14_9_16_R1_B_scaffold_2203_12
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10947..11909
DNA (963bp) protein (321aa)
Dihydrodipicolinate synthase (EC:4.2.1.52)
Dihydrodipicolinate synthase/N-acetylneuraminate lyase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CBI7_9RHIZ
Dihydrodipicolinate synthase/N-acetylneuraminate lyase {ECO:0000313|EMBL:EYR80305.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCN18_14_9_16_R1_B_scaffold_2203_13
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12172..12399)
DNA (228bp) protein (76aa)
Malate/L-lactate dehydrogenase n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UGA2_SINMW
malate/L-lactate dehydrogenase
Malate/L-lactate dehydrogenase {ECO:0000313|EMBL:ABR62682.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
Displaying 13 items

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