ggKbase home page

SCN18_14_9_16_R1_B_scaffold_2205

Search features with annotation key words

Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R1_B_scaffold_2205_1
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..2270)
DNA (2268bp) protein (756aa)
NAD-dependent malic enzyme {ECO:0000313|EMBL:EYR80071.1}; EC=1.1.1.39 {ECO:0000313|EMBL:EYR80071.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
dme; NAD-dependent malic enzyme (EC:1.1.1.39)
malic enzyme n=1 Tax=Rhizobium meliloti RepID=UPI0003735CE7
SCN18_14_9_16_R1_B_scaffold_2205_2
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2505..3350
DNA (846bp) protein (282aa)
Metallophosphoesterase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D093_9RHIZ
Metallophosphoesterase {ECO:0000313|EMBL:EYR80070.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCN18_14_9_16_R1_B_scaffold_2205_3
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3653..4876
DNA (1224bp) protein (408aa)
Putative 3-phenylpropionic acid transporter HcaT n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CR93_9RHIZ
Putative 3-phenylpropionic acid transporter HcaT {ECO:0000313|EMBL:EYR80069.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative Permease of the major facilitator superfamily
SCN18_14_9_16_R1_B_scaffold_2205_4
CN-SCN_Mesorhizobium_20x, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4846..5829)
DNA (984bp) protein (328aa)
ycjG; L-Ala-D/L-Glu epimerase (EC:5.1.1.-)
Mandelate racemase/muconate lactonizing protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CBD1_9RHIZ
Mandelate racemase/muconate lactonizing protein {ECO:0000313|EMBL:EYR80068.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCN18_14_9_16_R1_B_scaffold_2205_5
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5926..7113
DNA (1188bp) protein (396aa)
ABC transporter permease n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ET58_9RHIZ
ABC transporter permease {ECO:0000313|EMBL:EYR80067.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCN18_14_9_16_R1_B_scaffold_2205_6
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7122..7901
DNA (780bp) protein (260aa)
Putative ribonucleotide transport ATP-binding protein Mkl n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVR8_9RHIZ
Putative ribonucleotide transport ATP-binding protein Mkl {ECO:0000313|EMBL:EYR80066.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative ATP-binding component of ABC transporter
SCN18_14_9_16_R1_B_scaffold_2205_7
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7960..9330
DNA (1371bp) protein (457aa)
ABC-type transport system involved in resistance to organic solvent, periplasmic component n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D095_9RHIZ
ABC-type transport system involved in resistance to organic solvent, periplasmic component {ECO:0000313|EMBL:EYR80065.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter substrate-binding protein
SCN18_14_9_16_R1_B_scaffold_2205_8
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9465..10082
DNA (618bp) protein (206aa)
ABC-type transport system, auxiliary component n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CR98_9RHIZ
ABC-type transport system, auxiliary component {ECO:0000313|EMBL:EYR80064.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative ABC transporter protein
SCN18_14_9_16_R1_B_scaffold_2205_9
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10256..10783)
DNA (528bp) protein (176aa)
Putative transmembrane protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CBD6_9RHIZ
Putative transmembrane protein {ECO:0000313|EMBL:EYR80063.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
Displaying 9 items

View Taxonomy