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SCN18_14_9_16_R1_B_scaffold_2257

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R1_B_scaffold_2257_1
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..536)
DNA (534bp) protein (178aa)
Putative amino acid efflux transmembrane protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D7P1_9RHIZ
Putative amino acid efflux transmembrane protein {ECO:0000313|EMBL:EYR84159.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
LysE family amino acid efflux protein
SCN18_14_9_16_R1_B_scaffold_2257_2
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(573..896)
DNA (324bp) protein (108aa)
Nucleoid-associated protein SHLA_80c00100 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYW3_9RHIZ
Nucleoid-associated protein SHLA_49c000430 {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCN18_14_9_16_R1_B_scaffold_2257_3
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(925..2799)
DNA (1875bp) protein (625aa)
DNA polymerase III, subunits gamma and tau {ECO:0000313|EMBL:EYR84161.1}; EC=2.7.7.7 {ECO:0000313|EMBL:EYR84161.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
DNA polymerase III subunit gamma/tau n=1 Tax=Rhizobium giardinii RepID=UPI000367105E
dnaX; DNA polymerase III, subunits gamma and tau
SCN18_14_9_16_R1_B_scaffold_2257_4
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3080..3511
DNA (432bp) protein (144aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00036C0F9D
Diadenosine tetraphosphate hydrolase {ECO:0000313|EMBL:EYR84162.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative histidine triad (HIT) protein
SCN18_14_9_16_R1_B_scaffold_2257_5
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3508..4482
DNA (975bp) protein (325aa)
NADH pyrophosphatase NudC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EFC4_9RHIZ
NTP pyrophosphohydrolase {ECO:0000313|EMBL:EYR84163.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative NUDIX hydrolase
SCN18_14_9_16_R1_B_scaffold_2257_6
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4483..4719)
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. RepID=L0NEL6_RHISP
Uncharacterized protein {ECO:0000313|EMBL:CCF19241.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
hypothetical protein
SCN18_14_9_16_R1_B_scaffold_2257_7
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4803..5654)
DNA (852bp) protein (284aa)
P-protein PheA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CMA3_9RHIZ
Prephenate dehydratase {ECO:0000313|EMBL:EYR84165.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
pheA; prephenate dehydratase PheA
SCN18_14_9_16_R1_B_scaffold_2257_8
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5669..6424)
DNA (756bp) protein (252aa)
3-deoxy-manno-octulosonate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008}; EC=2.7.7.38 {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008};; CMP-2-keto-3-deoxyoctulosonic acid synthase {ECO:0000256|HAMAP-Rule:MF_00057}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
3-deoxy-manno-octulosonate cytidylyltransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CCX1_9RHIZ
kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase
SCN18_14_9_16_R1_B_scaffold_2257_9
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6577..7347
DNA (771bp) protein (257aa)
Cytochrome c n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C858_9RHIZ
Cytochrome c {ECO:0000313|EMBL:EYR84167.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cytochrome c class I
SCN18_14_9_16_R1_B_scaffold_2257_10
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7420..8364)
DNA (945bp) protein (315aa)
Putative permease n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ER00_9RHIZ
Putative permease {ECO:0000313|EMBL:EYR84168.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative auxin efflux carrier component 8 AtPIN8
SCN18_14_9_16_R1_B_scaffold_2257_11
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8930..14389
DNA (5460bp) protein (1820aa)
Putative alpha-2-macroglobulin domain-containing protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTG6_9RHIZ
Putative alpha-2-macroglobulin domain-containing protein {ECO:0000313|EMBL:EYR84169.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative inner membrane lipoprotein
SCN18_14_9_16_R1_B_scaffold_2257_12
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14401..16485
DNA (2085bp) protein (695aa)
Penicillin-binding protein 1C {ECO:0000313|EMBL:EYR84170.1}; EC=2.4.2.- {ECO:0000313|EMBL:EYR84170.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Penicillin-binding protein 1C n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X126_RHIFR
penicillin binding protein
SCN18_14_9_16_R1_B_scaffold_2257_13
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16519..17115)
DNA (597bp) protein (199aa)
Displaying 13 items

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