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SCN18_14_9_16_R1_B_scaffold_2259

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R1_B_scaffold_2259_1
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(32..1042)
DNA (1011bp) protein (337aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
DNA-directed RNA polymerase subunit alpha n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2P8U1_9RHIZ
rpoA; DNA-directed RNA polymerase subunit alpha
SCN18_14_9_16_R1_B_scaffold_2259_2
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1143..1532)
DNA (390bp) protein (130aa)
30S ribosomal protein S11 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYW4_9RHIZ
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
rpsK; 30S ribosomal protein S11
SCN18_14_9_16_R1_B_scaffold_2259_3
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1777..2145)
DNA (369bp) protein (123aa)
30S ribosomal protein S13 n=1 Tax=Rhizobium giardinii RepID=UPI000361796D
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
rpsM; 30S ribosomal protein S13
SCN18_14_9_16_R1_B_scaffold_2259_4
SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2374..2958)
DNA (585bp) protein (195aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
adk; adenylate kinase Adk (EC:2.7.4.3)
Adenylate kinase n=1 Tax=uncultured Sinorhizobium sp. RepID=C7E4J1_9RHIZ
SCN18_14_9_16_R1_B_scaffold_2259_5
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2955..4295)
DNA (1341bp) protein (447aa)
Protein translocase subunit SecY n=8 Tax=Rhizobium meliloti RepID=F6BVT5_SINMB
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
secY; secretion protein SecY
SCN18_14_9_16_R1_B_scaffold_2259_6
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4613..5092)
DNA (480bp) protein (160aa)
50S ribosomal protein L15 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CPS1_9RHIZ
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
rplO; 50S ribosomal subunit protein L15
SCN18_14_9_16_R1_B_scaffold_2259_7
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5106..5309)
DNA (204bp) protein (68aa)
50S ribosomal protein L30 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYV3_9RHIZ
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
rpmD; 50S ribosomal protein L30
SCN18_14_9_16_R1_B_scaffold_2259_8
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5323..5889)
DNA (567bp) protein (189aa)
30S ribosomal protein S5 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CU96_9RHIZ
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
rpsE; ribosomal protein S5
SCN18_14_9_16_R1_B_scaffold_2259_9
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6020..6382)
DNA (363bp) protein (121aa)
50S ribosomal protein L18 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ERR8_9RHIZ
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
rplR; 50S ribosomal protein L18
SCN18_14_9_16_R1_B_scaffold_2259_10
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6395..6928)
DNA (534bp) protein (178aa)
50S ribosomal protein L6 n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F1Z5_9RHIZ
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
rplF; 50S ribosomal protein L6
SCN18_14_9_16_R1_B_scaffold_2259_11
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6971..7369)
DNA (399bp) protein (133aa)
30S ribosomal protein S8 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CGP8_9RHIZ
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
rpsH; 30S ribosomal protein S8
SCN18_14_9_16_R1_B_scaffold_2259_12
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(7382..7687)
DNA (306bp) protein (102aa)
30S ribosomal protein S14 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CLI6_9RHIZ
30S ribosomal protein S14 {ECO:0000256|HAMAP-Rule:MF_00537}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
rpsN; ribosomal protein S14
SCN18_14_9_16_R1_B_scaffold_2259_13
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(7721..8278)
DNA (558bp) protein (186aa)
50S ribosomal protein L5 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CC55_9RHIZ
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
rplE; 50S ribosomal protein L5
SCN18_14_9_16_R1_B_scaffold_2259_14
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8271..8582)
DNA (312bp) protein (104aa)
50S ribosomal protein L24 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BWQ3_9RHIZ
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
rplX; 50S ribosomal protein L24
SCN18_14_9_16_R1_B_scaffold_2259_15
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8595..8963)
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=10 Tax=Rhizobium/Agrobacterium group RepID=RL14_AGRT5
rplN; 50S ribosomal protein L14
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
SCN18_14_9_16_R1_B_scaffold_2259_16
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9200..9436)
DNA (237bp) protein (79aa)
30S ribosomal protein S17 n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00036CA112
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
rpsQ; 30S ribosomal protein S17
SCN18_14_9_16_R1_B_scaffold_2259_17
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9449..9649)
DNA (201bp) protein (67aa)
50S ribosomal protein L29 n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F616_9RHIZ
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
rpmC; 50S ribosomal protein L29
SCN18_14_9_16_R1_B_scaffold_2259_18
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9662..10075)
DNA (414bp) protein (138aa)
50S ribosomal protein L16 n=11 Tax=Rhizobium RepID=RL16_RHIE6
rplP; 50S ribosomal protein L16
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
SCN18_14_9_16_R1_B_scaffold_2259_19
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(10114..10563)
DNA (450bp) protein (150aa)
30S ribosomal protein S3 n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q8U1_9RHIZ
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=1604021 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. UR51a.;"
30S ribosomal protein S3
Displaying 19 items

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