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SCN18_14_9_16_R1_B_scaffold_2498

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R1_B_scaffold_2498_1
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..258)
DNA (258bp) protein (86aa)
Thermoresistant gluconokinase GntK {ECO:0000313|EMBL:EYR80450.1}; EC=2.7.1.12 {ECO:0000313|EMBL:EYR80450.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Thermoresistant gluconokinase GntK n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CL56_9RHIZ
aroK1; shikimate kinase
SCN18_14_9_16_R1_B_scaffold_2498_2
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(271..1101)
DNA (831bp) protein (277aa)
Dipeptide transport ATP-binding protein DppF n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C5G9_9RHIZ
ABC-type dipeptide/oligopeptide/nickel transport system ATPase component DppF {ECO:0000313|EMBL:EYR80449.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
dppf1; oligopeptide ABC transporter
SCN18_14_9_16_R1_B_scaffold_2498_3
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1098..1952)
DNA (855bp) protein (285aa)
Dipeptide transport ATP-binding protein DppD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EN30_9RHIZ
ABC-type dipeptide/oligopeptide/nickel transport system ATPase component DppD {ECO:0000313|EMBL:EYR80448.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
dppD; dipeptide ABC transporter ATP-binding protein DppD
SCN18_14_9_16_R1_B_scaffold_2498_4
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1952..2860)
DNA (909bp) protein (303aa)
Dipeptide transport system permease protein DppC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQN0_9RHIZ
ABC-type dipeptide/oligopeptide/nickel transport system permease component {ECO:0000313|EMBL:EYR80447.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
dppC-1; dipeptide ABC transporter permease protein DppC 1
SCN18_14_9_16_R1_B_scaffold_2498_5
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2872..3939)
DNA (1068bp) protein (356aa)
peptide ABC transporter permease n=1 Tax=Rhizobium giardinii RepID=UPI000379F40F
ABC-type dipeptide/oligopeptide/nickel transport system permease component {ECO:0000313|EMBL:EYR80446.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
dppB-1; dipeptide ABC transporter permease protein DppB 1
SCN18_14_9_16_R1_B_scaffold_2498_6
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3978..5573)
DNA (1596bp) protein (532aa)
peptide ABC transporter substrate-binding protein n=1 Tax=Rhizobium giardinii RepID=UPI00036F9709
ABC-type dipeptide transport system periplasmic component {ECO:0000313|EMBL:EYR80445.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
dppA-1; dipeptide ABC transporter substrate-binding protein DppA 1
SCN18_14_9_16_R1_B_scaffold_2498_7
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5927..6646
DNA (720bp) protein (240aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00036C86F1
DNA-binding HTH domain-containing protein {ECO:0000313|EMBL:EYR80444.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative LuxR/GerE family transcriptional regulator
SCN18_14_9_16_R1_B_scaffold_2498_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6773..7180
DNA (408bp) protein (136aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000366BCEC
Response regulator {ECO:0000313|EMBL:EYR80443.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
chemotaxis protein CheY
SCN18_14_9_16_R1_B_scaffold_2498_9
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7193..7672)
DNA (480bp) protein (160aa)
transcriptional regulator n=1 Tax=Rhizobium meliloti RepID=UPI0003679148
Transcriptional regulator BadM/Rrf2 family {ECO:0000313|EMBL:EYR80442.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Rrf2 family protein
SCN18_14_9_16_R1_B_scaffold_2498_10
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7984..9480)
DNA (1497bp) protein (499aa)
Methylmalonate-semialdehyde dehydrogenase {ECO:0000313|EMBL:EYR80438.1}; EC=1.2.1.27 {ECO:0000313|EMBL:EYR80438.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
mmsa; Methylmalonate-semialdehyde dehydrogenase (EC:1.2.1.27)
Methylmalonate-semialdehyde dehydrogenase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CUM0_9RHIZ
SCN18_14_9_16_R1_B_scaffold_2498_11
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9585..9806
DNA (222bp) protein (74aa)
Transcriptional regulator, LysR family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CCF5_9RHIZ
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EYR80437.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transcriptional regulator, LysR family
Displaying 11 items

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