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SCN18_14_9_16_R1_B_scaffold_2613

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R1_B_scaffold_2613_1
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..811
DNA (810bp) protein (270aa)
Enoyl-[acyl-carrier-protein] reductase [NADH] {ECO:0000256|PIRNR:PIRNR000094}; EC=1.3.1.9 {ECO:0000256|PIRNR:PIRNR000094};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Enoyl-[acyl-carrier-protein] reductase 2 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D2W6_9RHIZ
enoyl-ACP reductase
SCN18_14_9_16_R1_B_scaffold_2613_2
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(860..1087)
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EYX1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR84141.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCN18_14_9_16_R1_B_scaffold_2613_3
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1188..1490)
DNA (303bp) protein (101aa)
Ribosomal RNA small subunit methyltransferase C {ECO:0000313|EMBL:EYR84144.1}; EC=2.1.1.172 {ECO:0000313|EMBL:EYR84144.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Ribosomal RNA small subunit methyltransferase C n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D7A9_9RHIZ
hypothetical protein
SCN18_14_9_16_R1_B_scaffold_2613_4
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1439..2188)
DNA (750bp) protein (250aa)
Ribosomal RNA small subunit methyltransferase C {ECO:0000313|EMBL:EYR84144.1}; EC=2.1.1.172 {ECO:0000313|EMBL:EYR84144.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Ribosomal RNA small subunit methyltransferase C n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D7A9_9RHIZ
small; methyltransferase Small
SCN18_14_9_16_R1_B_scaffold_2613_5
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2282..4423)
DNA (2142bp) protein (714aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Polyribonucleotide nucleotidyltransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D2W2_9RHIZ
polynucleotide phosphorylase/polyadenylase
SCN18_14_9_16_R1_B_scaffold_2613_6
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(4737..5006)
DNA (270bp) protein (90aa)
30S ribosomal protein S15 n=3 Tax=Rhizobium radiobacter RepID=F7U3L0_RHIRD
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
rpsO; 30S ribosomal subunit protein S15
SCN18_14_9_16_R1_B_scaffold_2613_7
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5221..6873)
DNA (1653bp) protein (551aa)
Blue-light-activated histidine kinase {ECO:0000313|EMBL:EYR84148.1}; EC=2.7.13.3 {ECO:0000313|EMBL:EYR84148.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Blue-light-activated histidine kinase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZS4_9RHIZ
conserved hypothetical protein with signal transduction histidine kinase domain, HWE region
SCN18_14_9_16_R1_B_scaffold_2613_8
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7100..8032)
DNA (933bp) protein (311aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043051}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043054};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
tRNA pseudouridine synthase B n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D4F5_9RHIZ
truB; tRNA pseudouridine synthase B
SCN18_14_9_16_R1_B_scaffold_2613_9
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8045..8455)
DNA (411bp) protein (137aa)
Ribosome-binding factor A n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVH5_9RHIZ
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
rbfA; ribosome-binding factor A
SCN18_14_9_16_R1_B_scaffold_2613_10
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8529..11063)
DNA (2535bp) protein (845aa)
Translation initiation factor IF-2 n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A5H2_RHIFH
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
infB; translation initiation factor IF-2
Displaying 10 items

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