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SCN18_14_9_16_R1_B_scaffold_2656

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R1_B_scaffold_2656_1
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..396)
DNA (396bp) protein (132aa)
Oligopeptide transport system permease protein OppC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EQQ7_9RHIZ
Oligopeptide ABC transport system permease protein OppC {ECO:0000313|EMBL:EYR78741.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
oligopeptide ABC transporter, membrane spanning protein
SCN18_14_9_16_R1_B_scaffold_2656_2
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(389..1312)
DNA (924bp) protein (308aa)
Oligopeptide transport system permease protein OppB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C7W7_9RHIZ
Oligopeptide ABC transport system permease protein OppB {ECO:0000313|EMBL:EYR78740.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC-type dipeptide/oligopeptide/nickel transport systems, permease component
SCN18_14_9_16_R1_B_scaffold_2656_3
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1372..2967)
DNA (1596bp) protein (532aa)
ABC transporter substrate-binding protein n=1 Tax=Rhizobium meliloti RepID=UPI000367724C
ABC-type oligopeptide transport system periplasmic component {ECO:0000313|EMBL:EYR78739.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC-type oligopeptide transport system, periplasmic component
SCN18_14_9_16_R1_B_scaffold_2656_4
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3245..4018
DNA (774bp) protein (258aa)
L-cystine-binding protein TcyA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CI08_9RHIZ
Amino acid ABC transporter substrate-binding protein, PAAT family {ECO:0000313|EMBL:EYR78738.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
tcyA; L-cystine ABC transporter substrate-binding protein TcyA
SCN18_14_9_16_R1_B_scaffold_2656_5
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4121..4801
DNA (681bp) protein (227aa)
Polar amino acid ABC transporter, inner membrane subunit n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CMU6_9RHIZ
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family {ECO:0000313|EMBL:EYR78737.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative amino acid ABC transporter, permease protein
SCN18_14_9_16_R1_B_scaffold_2656_6
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4798..5559
DNA (762bp) protein (254aa)
L-cystine import ATP-binding protein TcyC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CDG9_9RHIZ
ABC-type polar amino acid transport system ATPase component {ECO:0000313|EMBL:EYR78736.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
amino acid ABC transporter, ATP-binding protein
SCN18_14_9_16_R1_B_scaffold_2656_7
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5701..6144
DNA (444bp) protein (148aa)
Putative transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BXZ1_9RHIZ
Putative transcriptional regulator {ECO:0000313|EMBL:EYR78735.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative transcription regulator, XRE family
SCN18_14_9_16_R1_B_scaffold_2656_8
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6151..7962
DNA (1812bp) protein (604aa)
DNA-binding transcriptional activator of the SARP family n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=I9N2F1_RHILT
DNA-binding transcriptional regulator SARP family {ECO:0000313|EMBL:EYR78734.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cya4; adenylate cyclase Cya3
SCN18_14_9_16_R1_B_scaffold_2656_9
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8250..9374
DNA (1125bp) protein (375aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D276_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR78731.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
TPR domain protein
Displaying 9 items

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