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SCN18_14_9_16_R1_B_scaffold_2710

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R1_B_scaffold_2710_1
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..166)
DNA (165bp) protein (55aa)
Ribosome maturation factor RimM n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZG3_9RHIZ
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
rimM; 16S rRNA processing protein RimM
SCN18_14_9_16_R1_B_scaffold_2710_2
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(278..643)
DNA (366bp) protein (122aa)
30S ribosomal protein S16 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D891_9RHIZ
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
rpsP; 30S ribosomal protein S16
SCN18_14_9_16_R1_B_scaffold_2710_3
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(675..995)
DNA (321bp) protein (107aa)
Chorismate mutase {ECO:0000313|EMBL:EYR79672.1}; EC=5.4.99.5 {ECO:0000313|EMBL:EYR79672.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Chorismate mutase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D3U2_9RHIZ
tyrA; chorismate mutase
SCN18_14_9_16_R1_B_scaffold_2710_4
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1006..2550)
DNA (1545bp) protein (515aa)
Signal recognition particle protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EZQ7_9RHIZ
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
signal recognition particle protein
SCN18_14_9_16_R1_B_scaffold_2710_5
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2919..3818
DNA (900bp) protein (300aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Diaminopimelate epimerase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZF8_9RHIZ
dapF; diaminopimelate epimerase
SCN18_14_9_16_R1_B_scaffold_2710_6
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3815..5104
DNA (1290bp) protein (430aa)
Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB {ECO:0000313|EMBL:EYR79676.1}; EC=2.-.-.- {ECO:0000313|EMBL:EYR79676.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D884_9RHIZ
MiaB-like tRNA modifying enzyme
SCN18_14_9_16_R1_B_scaffold_2710_7
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5116..6681
DNA (1566bp) protein (522aa)
Signal recognition particle receptor FtsY n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D3T6_9RHIZ
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ftsY; signal recognition particle-docking protein FtsY
SCN18_14_9_16_R1_B_scaffold_2710_8
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6678..7436
DNA (759bp) protein (253aa)
Putative intracellular septation protein A n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EZQ3_9RHIZ
Probable intracellular septation protein A {ECO:0000256|HAMAP-Rule:MF_00189, ECO:0000256|SAAS:SAAS00082307}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ispZ; intracellular septation protein
SCN18_14_9_16_R1_B_scaffold_2710_9
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7440..8486)
DNA (1047bp) protein (349aa)
RNA polymerase sigma factor RpoH n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CS77_9RHIZ
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
rpoH2; RpoH2 heat shock sigma factor
SCN18_14_9_16_R1_B_scaffold_2710_10
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9399..10181
DNA (783bp) protein (261aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NJ74_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS30347.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCN18_14_9_16_R1_B_scaffold_2710_11
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10332..11234)
DNA (903bp) protein (301aa)
argG; argininosuccinate synthase ArgG (EC:6.3.4.5)
Argininosuccinate synthase {ECO:0000255|HAMAP-Rule:MF_00581}; EC=6.3.4.5 {ECO:0000255|HAMAP-Rule:MF_00581};; Citrulline--aspartate ligase {ECO:0000255|HAMAP-Rule:MF_00581}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Argininosuccinate synthase n=2 Tax=Oligotropha carboxidovorans RepID=ASSY_OLICO
Displaying 11 items

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