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SCN18_14_9_16_R2_B_scaffold_678

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R2_B_scaffold_678_1
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..804)
DNA (804bp) protein (268aa)
Transporter, major facilitator family protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CW71_9RHIZ
Arabinose polymer transporter {ECO:0000313|EMBL:KFC66688.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
Major facilitator family transporter
SCN18_14_9_16_R2_B_scaffold_678_2
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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906..1811
DNA (906bp) protein (302aa)
LysR family transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CRJ8_9RHIZ
LysR family transcriptional regulator {ECO:0000313|EMBL:KJF67474.1}; TaxID=1368418 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium nepotum 39/7.;"
Transcriptional regulator
SCN18_14_9_16_R2_B_scaffold_678_3
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1836..2852)
DNA (1017bp) protein (339aa)
UPI0003CE3552 related cluster n=1 Tax=unknown RepID=UPI0003CE3552
NADPH:quinone reductase {ECO:0000313|EMBL:ESZ10471.1}; TaxID=1287117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C085B000.;"
alginate lyase
SCN18_14_9_16_R2_B_scaffold_678_4
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2966..3373
DNA (408bp) protein (136aa)
HxlR family transcriptional regulator n=1 Tax=Paracoccus sp. TRP RepID=UPI000225F42A
HxlR family transcriptional regulator
Transcriptional regulator, HxlR family {ECO:0000313|EMBL:ACK51721.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCN18_14_9_16_R2_B_scaffold_678_5
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3567..4832)
DNA (1266bp) protein (422aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H171_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:ERF83502.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
major facilitator superfamily (MFS) transporter
SCN18_14_9_16_R2_B_scaffold_678_6
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5110..5724)
DNA (615bp) protein (205aa)
hypothetical protein, partial n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000371AC2F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KJX85592.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
SCN18_14_9_16_R2_B_scaffold_678_7
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5850..6515
DNA (666bp) protein (222aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI0003658DF2
Bradyrhizobium elkanii strain UASWS1015 Contig167, whole genome shotgun sequence {ECO:0000313|EMBL:KIU51008.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
two component response regulator
SCN18_14_9_16_R2_B_scaffold_678_8
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6548..7930
DNA (1383bp) protein (461aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
histidine kinase n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034CC30F
integral membrane sensor signal transduction histidine kinase
SCN18_14_9_16_R2_B_scaffold_678_9
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8367..9260
DNA (894bp) protein (298aa)
Transcriptional regulator, LysR family n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X2N4_OCHA4
LysR family transcriptional regulator
LysR family transcriptional regulator {ECO:0000313|EMBL:EXL03086.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
SCN18_14_9_16_R2_B_scaffold_678_10
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9276..9536)
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3KBE6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EMG52510.1}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
putative membrane protein
SCN18_14_9_16_R2_B_scaffold_678_11
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9775..11349
DNA (1575bp) protein (525aa)
Extracellular solute-binding protein family 5 n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X2N6_OCHA4
Peptide ABC transporter substrate-binding protein {ECO:0000313|EMBL:EXL03088.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
bacterial extracellular solute-binding s, 5 Middle family protein
SCN18_14_9_16_R2_B_scaffold_678_12
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11349..12296
DNA (948bp) protein (316aa)
ABC transporter permease n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1X5G3_9RHIZ
ABC transporter permease {ECO:0000313|EMBL:ERI16094.1}; TaxID=1390361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. EGD-AQ16.;"
binding-protein-dependent transport system inner membrane protein
SCN18_14_9_16_R2_B_scaffold_678_13
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12301..13119
DNA (819bp) protein (273aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X2N8_OCHA4
binding-protein-dependent transport system inner membrane protein
ABC transporter permease {ECO:0000313|EMBL:EXL03090.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
SCN18_14_9_16_R2_B_scaffold_678_14
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13116..14723
DNA (1608bp) protein (536aa)
nikE; nickel import ATP-binding protein NikE (EC:3.6.3.24)
ABC transporter n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1YZJ8_9RHIZ
ABC transporter {ECO:0000313|EMBL:ERI16096.1}; TaxID=1390361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. EGD-AQ16.;"
SCN18_14_9_16_R2_B_scaffold_678_15
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14786..16789
DNA (2004bp) protein (668aa)
Hydrolase CocE/NonD family protein n=2 Tax=Ochrobactrum intermedium RepID=C4WP39_9RHIZ
Peptidase S15 {ECO:0000313|EMBL:ELT48647.1}; TaxID=1234597 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium M86.;"
peptidase S15
SCN18_14_9_16_R2_B_scaffold_678_16
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17025..17171)
DNA (147bp) protein (49aa)
Uncharacterized protein n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6WVZ5_OCHA4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS13149.1}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCN18_14_9_16_R2_B_scaffold_678_17
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17563..17769
DNA (207bp) protein (69aa)
RNA polymerase n=188 Tax=Brucella RepID=C9TSB7_BRUPB
RNA polymerase
RNA polymerase {ECO:0000313|EMBL:KEY01879.1}; Uncharacterized protein {ECO:0000313|EMBL:EFM56608.1}; TaxID=470735 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella inopinata BO1.;"
SCN18_14_9_16_R2_B_scaffold_678_18
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17766..18338
DNA (573bp) protein (191aa)
RNA polymerase sigma factor n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6WYB1_OCHA4
RNA polymerase sigma factor
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCN18_14_9_16_R2_B_scaffold_678_19
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18388..18588
DNA (201bp) protein (67aa)
Uncharacterized protein n=3 Tax=Ochrobactrum intermedium RepID=M5JNH9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ELT48638.1}; TaxID=1234597 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium M86.;"
hypothetical protein
SCN18_14_9_16_R2_B_scaffold_678_20
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18572..19666)
DNA (1095bp) protein (365aa)
Signal transduction histidine kinase n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3IZ13_9RHIZ
Signal transduction histidine kinase {ECO:0000313|EMBL:EMG51936.1}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
signal transduction histidine kinase
SCN18_14_9_16_R2_B_scaffold_678_21
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19674..20240)
DNA (567bp) protein (189aa)
CheB methylesterase n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3HW88_9RHIZ
CheB methylesterase {ECO:0000313|EMBL:EMG51937.1}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
cheB methylesterase family protein
SCN18_14_9_16_R2_B_scaffold_678_22
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20237..21076)
DNA (840bp) protein (280aa)
MCP methyltransferase CheR-type n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X817_OCHA4
Chemotaxis protein CheR {ECO:0000313|EMBL:KDP74689.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
MCP methyltransferase CheR-type
SCN18_14_9_16_R2_B_scaffold_678_23
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21073..24423)
DNA (3351bp) protein (1117aa)
multi-sensor hybrid histidine kinase (EC:2.7.13.3)
Multi-sensor hybrid histidine kinase n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3KAQ5_9RHIZ
Multi-sensor hybrid histidine kinase {ECO:0000313|EMBL:EMG51939.1}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
SCN18_14_9_16_R2_B_scaffold_678_24
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25097..25492)
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3JIN3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EMG52108.1}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
hypothetical protein
SCN18_14_9_16_R2_B_scaffold_678_25
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25559..26116)
DNA (558bp) protein (186aa)
heme oxygenase n=1 Tax=Ochrobactrum anthropi RepID=UPI0002899CA8
Heme oxygenase-like protein {ECO:0000313|EMBL:EMG53474.1}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
heme oxygenase family protein
SCN18_14_9_16_R2_B_scaffold_678_26
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26273..26476)
DNA (204bp) protein (68aa)
UPI0003CFA627 related cluster n=1 Tax=unknown RepID=UPI0003CFA627
CsbD family protein
Uncharacterized protein {ECO:0000313|EMBL:ESZ28645.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
SCN18_14_9_16_R2_B_scaffold_678_27
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26524..26598)
DNA (75bp) protein (25aa)
Displaying 27 items

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