ggKbase home page

SCN18_14_9_16_R2_B_scaffold_907

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R2_B_scaffold_907_1
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..148
DNA (147bp) protein (49aa)
Ornithine cyclodeaminase/mu-crystallin n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HC67_9RHIZ
Ornithine cyclodeaminase/mu-crystallin {ECO:0000313|EMBL:EPE96312.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
SCN18_14_9_16_R2_B_scaffold_907_2
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(349..2373)
DNA (2025bp) protein (675aa)
hypothetical protein n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI0003753A70
Oligopeptide/dipeptide ABC transporter, ATP-binding protein domain {ECO:0000313|EMBL:EGN32803.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
oligopeptide/dipeptide ABC transporter ATPase
SCN18_14_9_16_R2_B_scaffold_907_3
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2417..3298)
DNA (882bp) protein (294aa)
ATP-dependent peptide transporter membrane subunit n=1 Tax=Pseudomonas sp. CFII64 RepID=S6HGC8_9PSED
ATP-dependent peptide transporter membrane subunit {ECO:0000313|EMBL:EPJ87952.1}; TaxID=911242 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. CFII64.;"
ATP-dependent peptide transporter membrane subunit
SCN18_14_9_16_R2_B_scaffold_907_4
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3298..4314)
DNA (1017bp) protein (339aa)
peptide ABC transporter permease n=1 Tax=Pseudomonas fluorescens RepID=UPI0002F8164A
Putative D,D-dipeptide transport system permease protein DdpB {ECO:0000313|EMBL:KFZ90252.1}; TaxID=160660 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Thiobacillus prosperus.;"
Dipeptide transport system permease protein DppB
SCN18_14_9_16_R2_B_scaffold_907_5
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4384..5952)
DNA (1569bp) protein (523aa)
YddS n=2 Tax=Enterobacter aerogenes RepID=G0EBD0_ENTAK
Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2); Putative hemin-binding lipoprotein
Peptide ABC transporter substrate-binding protein {ECO:0000313|EMBL:KHJ68377.1}; TaxID=1076549 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea rodasii.;"
SCN18_14_9_16_R2_B_scaffold_907_6
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6418..7668
DNA (1251bp) protein (417aa)
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738};; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
lysA; diaminopimelate decarboxylase (EC:4.1.1.20)
Diaminopimelate decarboxylase n=1 Tax=Rhizobium sp. CF142 RepID=J2APP2_9RHIZ
SCN18_14_9_16_R2_B_scaffold_907_7
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7739..8668)
DNA (930bp) protein (310aa)
transcriptional regulator n=1 Tax=Pantoea sp. A4 RepID=UPI000380FA5F
Transcriptional regulator {ECO:0000313|EMBL:KKD31882.1}; TaxID=1522060 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. 3.5.1.;"
lysR; transcriptional activator protein
SCN18_14_9_16_R2_B_scaffold_907_8
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8813..10279
DNA (1467bp) protein (489aa)
UPI0003CF3E7C related cluster n=1 Tax=unknown RepID=UPI0003CF3E7C
Microcystinase C {ECO:0000256|PIRNR:PIRNR012702}; Short=MlrC {ECO:0000256|PIRNR:PIRNR012702};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCN18_14_9_16_R2_B_scaffold_907_9
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10359..11291
DNA (933bp) protein (311aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197};; TaxID=1390361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. EGD-AQ16.;"
Diaminopimelate epimerase n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1XAJ5_9RHIZ
dapF; diaminopimelate epimerase
SCN18_14_9_16_R2_B_scaffold_907_10
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11316..12833
DNA (1518bp) protein (506aa)
MlrC domain protein n=2 Tax=Ochrobactrum intermedium RepID=C4WPT4_9RHIZ
MlrC domain protein {ECO:0000313|EMBL:EEQ94277.1}; TaxID=641118 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium LMG 3301.;"
hypothetical protein
SCN18_14_9_16_R2_B_scaffold_907_11
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13859..14407
DNA (549bp) protein (183aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002DBC40D
Invasion protein {ECO:0000313|EMBL:EZQ12649.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
invasion associated locus B (IalB) family protein
SCN18_14_9_16_R2_B_scaffold_907_12
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14483..17770
DNA (3288bp) protein (1096aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000365CEA0
Uncharacterized protein {ECO:0000313|EMBL:GAD51103.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
outer membrane autotransporter
Displaying 12 items

View Taxonomy