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SCN18_14_9_16_R4_B_scaffold_904

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R4_B_scaffold_904_1
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..109)
DNA (108bp) protein (36aa)
tyrosine recombinase XerD n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CB152
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
recombinase XerD
SCN18_14_9_16_R4_B_scaffold_904_2
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(251..2035)
DNA (1785bp) protein (595aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000364B0FE
Uncharacterized protein {ECO:0000313|EMBL:EZP56750.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein
SCN18_14_9_16_R4_B_scaffold_904_3
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2016..2153)
DNA (138bp) protein (46aa)
Putative uncharacterized protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WSN3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAL99420.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
SCN18_14_9_16_R4_B_scaffold_904_4
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2300..2791
DNA (492bp) protein (164aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
shikimate kinase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B5DE5D
shikimate kinase
SCN18_14_9_16_R4_B_scaffold_904_5
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2788..3891
DNA (1104bp) protein (368aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
3-dehydroquinate synthase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B3E4C1
3-dehydroquinate synthase
SCN18_14_9_16_R4_B_scaffold_904_6
unknown

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3940..4704
DNA (765bp) protein (255aa)

This feature has no annotations

SCN18_14_9_16_R4_B_scaffold_904_7
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4913..5524)
DNA (612bp) protein (204aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00035EB902
Opacity protein antigens-like protein {ECO:0000313|EMBL:EZP52641.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
putative outer membrane protein
SCN18_14_9_16_R4_B_scaffold_904_8
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6383..6715)
DNA (333bp) protein (111aa)
membrane protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B4D6FD
Sphingomonas taxi strain 30a NODE_6, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29478.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
membrane protein
SCN18_14_9_16_R4_B_scaffold_904_9
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6718..8478)
DNA (1761bp) protein (587aa)
sodium/hydrogen exchanger n=1 Tax=Sphingomonas melonis RepID=UPI00037502CE
sodium:proton exchanger
Sodium:proton exchanger {ECO:0000313|EMBL:AIT07918.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCN18_14_9_16_R4_B_scaffold_904_10
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8471..8905)
DNA (435bp) protein (145aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00035C670B
Putative NifU-like protein {ECO:0000313|EMBL:GAM01873.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
nitrogen-fixing protein NifU
SCN18_14_9_16_R4_B_scaffold_904_11
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8902..9480)
DNA (579bp) protein (193aa)
colicin V production protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CB15C
Colicin V production protein {ECO:0000313|EMBL:KHA64745.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
colicin V production protein
SCN18_14_9_16_R4_B_scaffold_904_12
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9782..11200)
DNA (1419bp) protein (473aa)
DNA repair protein RadA n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CB15D
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
DNA repair protein RadA
SCN18_14_9_16_R4_B_scaffold_904_13
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11242..11679
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S147_9SPHN
hypothetical protein
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
SCN18_14_9_16_R4_B_scaffold_904_14
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11721..12428)
DNA (708bp) protein (236aa)
Glutathione S-transferase-like protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QRZ9_NITHX
glutathione S-transferase
Glutathione S-transferase-like protein {ECO:0000313|EMBL:ABE60998.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_14_9_16_R4_B_scaffold_904_15
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12585..13127
DNA (543bp) protein (181aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00035E3ED7
Uncharacterized protein {ECO:0000313|EMBL:KKC24479.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
hypothetical protein
SCN18_14_9_16_R4_B_scaffold_904_16
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(13176..15839)
DNA (2664bp) protein (888aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
alanyl-tRNA synthetase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B56616
alanyl-tRNA synthetase
SCN18_14_9_16_R4_B_scaffold_904_17
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15932..16471)
DNA (540bp) protein (180aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
peptide deformylase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B2E72C
peptide deformylase
SCN18_14_9_16_R4_B_scaffold_904_18
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16503..17099)
DNA (597bp) protein (199aa)
recombinase RecR n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CD167
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
recombinase RecR
SCN18_14_9_16_R4_B_scaffold_904_19
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17155..17469
DNA (315bp) protein (105aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003784A6E
methionyl-tRNA formyltransferase
Displaying 19 items

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