ggKbase home page

SCN18_25_1_16_R1_B_scaffold_71

Search features with annotation key words

Displaying items 1-30 of 167 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_1_16_R1_B_scaffold_71_1
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

213..1139
DNA (927bp) protein (309aa)
Adenylate/guanylate cyclase with Chase sensor n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T7E0_ACIDE
Adenylate/guanylate cyclase with Chase sensor {ECO:0000313|EMBL:EER59615.1}; Flags: Precursor;; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
guanylate cyclase
SCN18_25_1_16_R1_B_scaffold_71_2
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1136..1651
DNA (516bp) protein (172aa)
SH3 type 3 domain protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T7D9_ACIDE
SH3 type 3 domain protein {ECO:0000313|EMBL:EER59614.1}; Flags: Precursor;; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
SH3 type 3 domain protein
SCN18_25_1_16_R1_B_scaffold_71_3
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1648..2565
DNA (918bp) protein (306aa)
Peptidase M48 Ste24p n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T7D8_ACIDE
Peptidase M48 Ste24p {ECO:0000313|EMBL:EER59613.1}; Flags: Precursor;; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
TPR repeat-containing Zn-dependent protease
SCN18_25_1_16_R1_B_scaffold_71_4
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2655..3008)
DNA (354bp) protein (118aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI00037A65F6
ArsR family transcriptional regulator
Transcriptional regulator, ArsR family-like protein {ECO:0000313|EMBL:AEG92461.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCN18_25_1_16_R1_B_scaffold_71_5
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3020..5950)
DNA (2931bp) protein (977aa)
Uncharacterized protein n=1 Tax=Pseudomonas alcaligenes NBRC 14159 RepID=U3B1Q1_PSEAC
Uncharacterized protein {ECO:0000313|EMBL:GAD63789.1}; TaxID=1215092 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas alcaligenes NBRC 14159.;"
diguanylate cyclase/phosphodiesterase
SCN18_25_1_16_R1_B_scaffold_71_6
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6008..6766)
DNA (759bp) protein (253aa)
trmB; tRNA (guanine-n(7)-)-methyltransferase (EC:2.1.1.33)
tRNA (guanine-N(7)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; EC=2.1.1.33 {ECO:0000256|HAMAP-Rule:MF_01057};; tRNA (guanine(46)-N(7))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; tRNA(m7G46)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
tRNA (guanine-N(7)-)-methyltransferase n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MJA0_ACIET
SCN18_25_1_16_R1_B_scaffold_71_7
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6721..7665)
DNA (945bp) protein (315aa)
glutamate--tRNA ligase (EC:6.1.1.17)
Glutamyl-Q tRNA(Asp) synthetase {ECO:0000256|HAMAP-Rule:MF_01428, ECO:0000256|SAAS:SAAS00018238}; Short=Glu-Q-RSs {ECO:0000256|HAMAP-Rule:MF_01428};; EC=6.1.1.- {ECO:0000256|HAMAP-Rule:MF_01428, ECO:0000256|SAAS:SAAS00018222};; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
Glutamyl-Q tRNA(Asp) synthetase n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MJA1_ACIET
SCN18_25_1_16_R1_B_scaffold_71_8
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7716..8777)
DNA (1062bp) protein (354aa)
FAD dependent oxidoreductase n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MJA2_ACIET
fad dependent oxidoreductase
FAD dependent oxidoreductase {ECO:0000313|EMBL:ACM33240.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCN18_25_1_16_R1_B_scaffold_71_9
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8944..9882)
DNA (939bp) protein (313aa)
LysR family transcriptional regulator n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036C25D8
Transcriptional regulator {ECO:0000313|EMBL:GAD20408.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
LysR family transcriptional regulator
SCN18_25_1_16_R1_B_scaffold_71_10
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9996..10697
DNA (702bp) protein (234aa)
Pirin domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TRU5_ALIDB
pirin
Pirin domain protein {ECO:0000313|EMBL:AEB85241.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCN18_25_1_16_R1_B_scaffold_71_11
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10772..11512)
DNA (741bp) protein (247aa)
Putative arginyl-tRNA--protein transferase {ECO:0000256|HAMAP-Rule:MF_00689, ECO:0000256|SAAS:SAAS00194293}; Short=Arginyltransferase {ECO:0000256|HAMAP-Rule:MF_00689};; Short=R-transferase {ECO:0000256|HAMAP-Rule:MF_00689};; EC=2.3.2.8 {ECO:0000256|HAMAP-Rule:MF_00689, ECO:0000256|SAAS:SAAS00194290};; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
arginyl-tRNA-protein transferase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000363F5E8
arginyl-tRNA--protein transferase
SCN18_25_1_16_R1_B_scaffold_71_12
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11509..12258)
DNA (750bp) protein (250aa)
aat; leucyl/phenylalanyl-tRNA--protein transferase (EC:2.3.2.6)
Leucyl/phenylalanyl-tRNA--protein transferase {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088489}; EC=2.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088482};; L/F-transferase {ECO:0000256|HAMAP-Rule:MF_00688}; Leucyltransferase {ECO:0000256|HAMAP-Rule:MF_00688}; Phenyalanyltransferase {ECO:0000256|HAMAP-Rule:MF_00688}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
Leucyl/phenylalanyl-tRNA--protein transferase n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MJA7_ACIET
SCN18_25_1_16_R1_B_scaffold_71_13
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12298..13500)
DNA (1203bp) protein (401aa)
Tryptophan synthase beta chain (EC:4.2.1.20)
Tryptophan synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00133, ECO:0000313|EMBL:CDM24906.1}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00133, ECO:0000313|EMBL:CDM24906.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
Tryptophan synthase beta chain n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T7J9_ACIDE
SCN18_25_1_16_R1_B_scaffold_71_14
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13774..14385)
DNA (612bp) protein (204aa)
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI00037A107E
Lysine transporter LysE {ECO:0000313|EMBL:EXL09406.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
RhtB family transporter
SCN18_25_1_16_R1_B_scaffold_71_15
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14550..15359)
DNA (810bp) protein (270aa)
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI000366C347
AraC family transcriptional regulator {ECO:0000313|EMBL:EXL09407.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
AraC family transcriptional regulator
SCN18_25_1_16_R1_B_scaffold_71_16
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15516..15929)
DNA (414bp) protein (138aa)
lactoylglutathione lyase (EC:4.4.1.5)
glyoxalase I n=1 Tax=Comamonas sp. B-9 RepID=UPI00039571BD
Tax=BJP_08E140C01_Burkholderiales_65_30
SCN18_25_1_16_R1_B_scaffold_71_17
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15989..17059
DNA (1071bp) protein (357aa)
Selenide, water dikinase {ECO:0000256|HAMAP-Rule:MF_00625, ECO:0000256|SAAS:SAAS00014883}; EC=2.7.9.3 {ECO:0000256|HAMAP-Rule:MF_00625, ECO:0000256|SAAS:SAAS00014883};; Selenium donor protein {ECO:0000256|HAMAP-Rule:MF_00625}; Selenophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00625}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
Selenide, water dikinase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UYI5_VARPE
selenide, water dikinase
SCN18_25_1_16_R1_B_scaffold_71_18
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17111..17698)
DNA (588bp) protein (196aa)
hypothetical protein n=1 Tax=Brachymonas chironomi RepID=UPI000372504F
hypothetical protein
Tax=GWA2_Burkholderiales_64_37_curated
SCN18_25_1_16_R1_B_scaffold_71_19
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17872..19161)
DNA (1290bp) protein (430aa)
Homogentisate 1,2-dioxygenase (EC:1.13.11.5)
Homogentisate 1,2-dioxygenase {ECO:0000256|HAMAP-Rule:MF_00334, ECO:0000256|SAAS:SAAS00015626}; Short=HGDO {ECO:0000256|HAMAP-Rule:MF_00334};; EC=1.13.11.5 {ECO:0000256|HAMAP-Rule:MF_00334, ECO:0000256|SAAS:SAAS00015614};; Homogentisate oxygenase {ECO:0000256|HAMAP-Rule:MF_00334}; Homogentisic acid oxidase {ECO:0000256|HAMAP-Rule:MF_00334}; Homogentisicase {ECO:0000256|HAMAP-Rule:MF_00334}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
Homogentisate 1,2-dioxygenase n=1 Tax=Pandoraea pnomenusa 3kgm RepID=V5PR89_9BURK
SCN18_25_1_16_R1_B_scaffold_71_20
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19332..19739)
DNA (408bp) protein (136aa)
Redox protein, regulator of disulfide bond formation n=1 Tax=Acidovorax sp. NO-1 RepID=H0BXW3_9BURK
Osmotically inducible protein C {ECO:0000313|EMBL:EYC52108.1}; TaxID=1458275 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis str. Niagara R.;"
redox protein, regulator of disulfide bond formation
SCN18_25_1_16_R1_B_scaffold_71_21
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20034..21020
DNA (987bp) protein (329aa)
thyA; thymidylate synthase (EC:2.1.1.45)
thymidylate synthase n=1 Tax=Comamonas sp. B-9 RepID=UPI0003956ECB
Tax=BJP_IG2103_Dechloromonas_60_92
SCN18_25_1_16_R1_B_scaffold_71_22
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21097..22524)
DNA (1428bp) protein (476aa)
FAD linked oxidase domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TWT5_ALIDB
fad linked oxidase domain-containing protein
FAD linked oxidase domain protein {ECO:0000313|EMBL:ADV00725.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCN18_25_1_16_R1_B_scaffold_71_23
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22502..22927)
DNA (426bp) protein (142aa)
Membrane protein-like protein n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TM56_ACIAC
hypothetical protein
Membrane protein-like protein {ECO:0000313|EMBL:ABM32044.1}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
SCN18_25_1_16_R1_B_scaffold_71_24
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22958..24223
DNA (1266bp) protein (422aa)
UPF0761 membrane protein Alide_2997 n=2 Tax=Alicycliphilus denitrificans RepID=E8TWT3_ALIDB
ribonuclease bn
UPF0761 membrane protein ALISP_4049 {ECO:0000256|HAMAP-Rule:MF_00672}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCN18_25_1_16_R1_B_scaffold_71_25
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24201..26792)
DNA (2592bp) protein (864aa)
DNA mismatch repair protein MutS n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GDX5_ALIDK
DNA mismatch repair protein mutS
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCN18_25_1_16_R1_B_scaffold_71_26
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27113..29092
DNA (1980bp) protein (660aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
cell division protein (EC:3.4.24.-)
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=FTSH_SYNAS
SCN18_25_1_16_R1_B_scaffold_71_27
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29227..30117
DNA (891bp) protein (297aa)
dihydrodipicolinate synthase n=1 Tax=Halomonas lutea RepID=UPI00035F73FA
Uncharacterized protein {ECO:0000313|EMBL:CDG53169.1}; TaxID=1346287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas sp. A3H3.;"
dihydrodipicolinate synthase
SCN18_25_1_16_R1_B_scaffold_71_28
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30164..31360)
DNA (1197bp) protein (399aa)
aromatic amino acid aminotransferase (EC:2.6.1.-)
Aromatic-amino-acid transaminase n=2 Tax=Bacteria RepID=S2X643_DELAC
Aromatic amino acid aminotransferase {ECO:0000313|EMBL:KEH10080.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
SCN18_25_1_16_R1_B_scaffold_71_29
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31459..33522
DNA (2064bp) protein (688aa)
UvrABC system protein B n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W7U3_ACISJ
excinuclease ABC subunit B
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCN18_25_1_16_R1_B_scaffold_71_30
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33693..34223
DNA (531bp) protein (177aa)
DNA-binding protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000364D947
DNA-binding protein {ECO:0000313|EMBL:KJA12212.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
iron-sulfur cluster assembly transcription factor iscr
Displaying items 1-30 of 167 in total

View Taxonomy