ggKbase home page

SCN18_25_1_16_R1_B_scaffold_165

Search features with annotation key words

Displaying items 1-30 of 87 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_1_16_R1_B_scaffold_165_1
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..83)
DNA (81bp) protein (27aa)
SCN18_25_1_16_R1_B_scaffold_165_2
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(214..714)
DNA (501bp) protein (167aa)
small integral membrane protein (EC:3.6.1.3)
membrane protein n=1 Tax=Pseudomonas sp. PAMC 25886 RepID=UPI000287DDB6
Putative membrane protein {ECO:0000313|EMBL:KIH85626.1}; TaxID=226910 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas batumici.;"
SCN18_25_1_16_R1_B_scaffold_165_3
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

811..1521
DNA (711bp) protein (237aa)
Putative carbonic anhydrase n=1 Tax=uncultured bacterium 888 RepID=B8R8Q9_9BACT
carbonic anhydrase
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
SCN18_25_1_16_R1_B_scaffold_165_4
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1581..4859)
DNA (3279bp) protein (1093aa)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
carbamoyl-phosphate synthase large subunit (EC:6.3.4.16)
carbamoyl phosphate synthase large subunit n=1 Tax=Acidovorax avenae RepID=UPI0002DF16D1
SCN18_25_1_16_R1_B_scaffold_165_5
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4872..5249)
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W8H7_ACISJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM42552.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCN18_25_1_16_R1_B_scaffold_165_6
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5266..6438)
DNA (1173bp) protein (391aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
Carbamoyl-phosphate synthase small chain n=2 Tax=Acidovorax RepID=A1W8H8_ACISJ
carbamoyl-phosphate synthase small subunit
SCN18_25_1_16_R1_B_scaffold_165_7
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6641..7354
DNA (714bp) protein (238aa)
Bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase id=1262648 bin=GWE1_Burkholderiales_65_30 species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
ubiG; 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase
Tax=GWE1_Burkholderiales_65_30_curated
SCN18_25_1_16_R1_B_scaffold_165_8
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7351..8022
DNA (672bp) protein (224aa)
Phosphoglycolate phosphatase {ECO:0000256|SAAS:SAAS00077902}; EC=3.1.3.18 {ECO:0000256|SAAS:SAAS00077902};; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037A8B59
phosphoglycolate phosphatase
SCN18_25_1_16_R1_B_scaffold_165_9
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8158..8754)
DNA (597bp) protein (199aa)
Uracil-DNA glycosylase family protein n=1 Tax=gamma proteobacterium HdN1 RepID=E1VNE4_9GAMM
uracil-DNA glycosylase
Uracil-DNA glycosylase family protein {ECO:0000313|EMBL:CBL46336.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
SCN18_25_1_16_R1_B_scaffold_165_10
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8829..10142
DNA (1314bp) protein (438aa)
AAA ATPase central domain protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TQ19_ALIDB
ATPase AAA
AAA ATPase central domain protein {ECO:0000313|EMBL:ADU98953.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCN18_25_1_16_R1_B_scaffold_165_11
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10227..11648)
DNA (1422bp) protein (474aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
pykA2; pyruvate kinase (EC:2.7.1.40)
Pyruvate kinase n=1 Tax=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) RepID=Q1LN74_RALME
SCN18_25_1_16_R1_B_scaffold_165_12
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11665..12930)
DNA (1266bp) protein (422aa)
hydroxypyruvate reductase (EC:1.1.1.81)
Hydroxypyruvate reductase {ECO:0000313|EMBL:ACB33401.1}; EC=1.1.1.81 {ECO:0000313|EMBL:ACB33401.1};; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
Hydroxypyruvate reductase n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y407_LEPCP
SCN18_25_1_16_R1_B_scaffold_165_13
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12945..13856)
DNA (912bp) protein (304aa)
2-hydroxy-3-oxopropionate reductase (EC:1.1.1.60)
2-hydroxy-3-oxopropionate reductase n=2 Tax=Alicycliphilus denitrificans RepID=E8TXP9_ALIDB
Tartronate semialdehyde reductase {ECO:0000313|EMBL:KJS30534.1}; TaxID=1629708 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfatitalea.;" source="Desulfatitalea sp. BRH_c12.;"
SCN18_25_1_16_R1_B_scaffold_165_14
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13885..14664)
DNA (780bp) protein (260aa)
hydroxypyruvate isomerase (EC:5.3.1.22)
Hydroxypyruvate isomerase {ECO:0000256|PIRNR:PIRNR006241}; EC=5.3.1.22 {ECO:0000256|PIRNR:PIRNR006241};; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
Hydroxypyruvate isomerase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5WYM0_THIK1
SCN18_25_1_16_R1_B_scaffold_165_15
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14678..16459)
DNA (1782bp) protein (594aa)
glyoxylate carboligase (EC:4.1.1.47)
glyoxylate carboligase n=1 Tax=Acidovorax radicis RepID=UPI0002376D4E
Glyoxylate carboligase {ECO:0000313|EMBL:EPD42260.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
SCN18_25_1_16_R1_B_scaffold_165_16
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16490..17512
DNA (1023bp) protein (341aa)
Transcriptional regulator, LysR family n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q122U8_POLSJ
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABE46444.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
SCN18_25_1_16_R1_B_scaffold_165_17
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17525..18796)
DNA (1272bp) protein (424aa)
Fmu (Sun) domain protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GE77_ALIDK
Fmu (Sun) domain-containing protein
Fmu domain-containing protein {ECO:0000313|EMBL:GAO27051.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCN18_25_1_16_R1_B_scaffold_165_18
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18853..19428)
DNA (576bp) protein (192aa)
Phosphoribosylglycinamide formyltransferase n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WB86_ACISJ
purN; phosphoribosylglycinamide formyltransferase
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCN18_25_1_16_R1_B_scaffold_165_19
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19450..20112
DNA (663bp) protein (221aa)
UPF0502 protein Ajs_3392 n=1 Tax=Acidovorax sp. (strain JS42) RepID=Y3392_ACISJ
hypothetical protein
UPF0502 protein Ajs_3392 {ECO:0000255|HAMAP-Rule:MF_01584}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCN18_25_1_16_R1_B_scaffold_165_20
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20189..21370
DNA (1182bp) protein (394aa)
Acyl-CoA dehydrogenase n=1 Tax=Acidovorax sp. CF316 RepID=J0KI43_9BURK
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:EJE53315.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
acyl-CoA dehydrogenase
SCN18_25_1_16_R1_B_scaffold_165_21
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21504..22619
DNA (1116bp) protein (372aa)
Acyl-CoA dehydrogenase domain-containing protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TQ07_ALIDB
acyl-CoA dehydrogenase
Acyl-CoA dehydrogenase domain-containing protein {ECO:0000313|EMBL:ADU98941.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCN18_25_1_16_R1_B_scaffold_165_22
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22670..23725)
DNA (1056bp) protein (352aa)
2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT id=2033351 bin=GWB2_Geobacter-like_52_12 species=unknown genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWB2_Geobacter-like_52_12 organism_group=Deltaproteobacteria organism_desc=Good
sugar ABC transporter ATP-binding protein
Tax=GWB2_Geobacteraceae_52_12_curated
SCN18_25_1_16_R1_B_scaffold_165_23
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23722..24804)
DNA (1083bp) protein (361aa)
2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT id=2033352 bin=GWB2_Geobacter-like_52_12 species=unknown genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWB2_Geobacter-like_52_12 organism_group=Deltaproteobacteria organism_desc=Good
sugar ABC transporter ATP-binding protein
Tax=GWB2_Geobacteraceae_52_12_curated
SCN18_25_1_16_R1_B_scaffold_165_24
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24816..25664)
DNA (849bp) protein (283aa)
ABC transporter permease protein id=2033353 bin=GWB2_Geobacter-like_52_12 species=Thalassiobium sp. R2A62 genus=Thalassobium taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWB2_Geobacter-like_52_12 organism_group=Deltaproteobacteria organism_desc=Good
ABC transporter permease
Tax=GWB2_Geobacteraceae_52_12_curated
SCN18_25_1_16_R1_B_scaffold_165_25
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25661..26542)
DNA (882bp) protein (294aa)
Binding-protein-dependent transport systems inner membrane component id=2033354 bin=GWB2_Geobacter-like_52_12 species=Thalassiobium sp. R2A62 genus=Thalassobium taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWB2_Geobacter-like_52_12 organism_group=Deltaproteobacteria organism_desc=Good
hypothetical protein
Tax=GWB2_Geobacteraceae_52_12_curated
SCN18_25_1_16_R1_B_scaffold_165_26
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26675..28273)
DNA (1599bp) protein (533aa)
ABC transporter solute-binding protein id=2033356 bin=GWB2_Geobacter-like_52_12 species=Thalassiobium sp. R2A62 genus=Thalassobium taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWB2_Geobacter-like_52_12 organism_group=Deltaproteobacteria organism_desc=Good
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
SCN18_25_1_16_R1_B_scaffold_165_27
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28315..29367)
DNA (1053bp) protein (351aa)
Blr3675 protein id=2033358 bin=GWB2_Geobacter-like_52_12 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWB2_Geobacter-like_52_12 organism_group=Deltaproteobacteria organism_desc=Good
alcohol dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
SCN18_25_1_16_R1_B_scaffold_165_28
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29605..31485
DNA (1881bp) protein (627aa)
Putative sigma-54-dependent transcriptional regulator, HTH Fis-type family id=2033360 bin=GWB2_Geobacter-like_52_12 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWB2_Geobacter-like_52_12 organism_group=Deltaproteobacteria organism_desc=Good
putative phytochrome sensor protein
Tax=GWB2_Geobacteraceae_52_12_curated
SCN18_25_1_16_R1_B_scaffold_165_29
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31577..31765)
DNA (189bp) protein (63aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037CFED5
Uncharacterized protein {ECO:0000313|EMBL:GAD21488.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
SCN18_25_1_16_R1_B_scaffold_165_30
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31887..32570)
DNA (684bp) protein (228aa)
Methyladenine glycosylase n=2 Tax=Alicycliphilus denitrificans RepID=E8TRI9_ALIDB
methyladenine glycosylase
Methyladenine glycosylase {ECO:0000313|EMBL:AEB85927.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Displaying items 1-30 of 87 in total

View Taxonomy