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SCN18_25_1_16_R1_B_scaffold_2475

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Displaying 6 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_1_16_R1_B_scaffold_2475_1
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(107..883)
DNA (777bp) protein (259aa)
Formamidopyrimidine-DNA glycosylase (EC:3.2.2.23)
Formamidopyrimidine-DNA glycosylase {ECO:0000256|SAAS:SAAS00020852, ECO:0000313|EMBL:CDM25706.1}; EC=3.2.2.- {ECO:0000256|SAAS:SAAS00275239};; EC=3.2.2.23 {ECO:0000256|SAAS:SAAS00020832, ECO:0000313|EMBL:CDM25706.1};; EC=4.2.99.18 {ECO:0000256|SAAS:SAAS00054019};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
Formamidopyrimidine-DNA glycosylase n=2 Tax=Bordetella holmesii RepID=M5NT43_9BORD
SCN18_25_1_16_R1_B_scaffold_2475_2
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1020..2795
DNA (1776bp) protein (592aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI00036C709E
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDM25705.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
SCN18_25_1_16_R1_B_scaffold_2475_3
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2792..3403
DNA (612bp) protein (204aa)
Outer membrane lipoprotein LolB n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GQW4_PUSST
Outer membrane lipoprotein LolB
Outer-membrane lipoprotein LolB {ECO:0000256|SAAS:SAAS00002103}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
SCN18_25_1_16_R1_B_scaffold_2475_4
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3417..4319
DNA (903bp) protein (301aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GQW3_PUSST
SCN18_25_1_16_R1_B_scaffold_2475_trna_1
unknown

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4325..4398
DNA (74bp)
transferRNA Gln
SCN18_25_1_16_R1_B_scaffold_2475_5
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4522..5346
DNA (825bp) protein (275aa)
Ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583, ECO:0000313|EMBL:CDM25702.1}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583, ECO:0000313|EMBL:CDM25702.1};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
Ribose-phosphate pyrophosphokinase n=1 Tax=Bordetella pertussis (strain ATCC 9797 / DSM 5571 / NCTC 10739 / 18323) RepID=J7RI99_BORP1
Displaying 6 items

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