ggKbase home page

SCN18_25_1_16_R1_B_scaffold_194

Search features with annotation key words

Displaying items 1-30 of 78 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_1_16_R1_B_scaffold_194_1
CN-SCN_Lautropia_89x, CN-SCN_Lautropia_89x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..305)
DNA (303bp) protein (101aa)
Cyclic nucleotide-binding domain-containing protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GNN0_PUSST
cyclic nucleotide-binding domain-containing protein
Cyclic nucleotide-binding domain-containing protein {ECO:0000313|EMBL:AEC19168.1}; TaxID=1007105 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Pusillimonas.;" source="Pusillimonas sp. (strain T7-7).;"
SCN18_25_1_16_R1_B_scaffold_194_2
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(341..1513)
DNA (1173bp) protein (391aa)
Epoxyqueuosine reductase {ECO:0000256|HAMAP-Rule:MF_00916}; EC=1.17.99.6 {ECO:0000256|HAMAP-Rule:MF_00916};; Queuosine biosynthesis protein QueG {ECO:0000256|HAMAP-Rule:MF_00916}; TaxID=497321 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 63.;"
Epoxyqueuosine reductase n=1 Tax=Thauera sp. 63 RepID=N6YBT5_9RHOO
iron-sulfur 4Fe-4S ferredoxin protein
SCN18_25_1_16_R1_B_scaffold_194_3
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1544..2029
DNA (486bp) protein (162aa)
P-loop hydrolase; K06925 UPF0079 ATP-binding protein id=12493595 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
SCN18_25_1_16_R1_B_scaffold_194_4
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1990..3384
DNA (1395bp) protein (465aa)
amiC; N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28)
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=UPI000361AD13
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:EON18586.1}; TaxID=1229514 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. GA3-3.;"
SCN18_25_1_16_R1_B_scaffold_194_5
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3464..4162)
DNA (699bp) protein (233aa)
Response regulator n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AMR9_9PROT
response regulator
Response regulator {ECO:0000313|EMBL:BAN36114.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
SCN18_25_1_16_R1_B_scaffold_194_6
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4387..5055)
DNA (669bp) protein (223aa)
SNARE-like domain protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RXX5_9BURK
SNARE-like domain protein {ECO:0000313|EMBL:EFV94799.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
hypothetical protein
SCN18_25_1_16_R1_B_scaffold_194_7
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5064..7073
DNA (2010bp) protein (670aa)
DNA mismatch repair protein MutL n=1 Tax=Pandoraea sp. SD6-2 RepID=R7WZ57_9BURK
mutL; DNA mismatch repair protein
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=93221 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pulmonicola.;"
SCN18_25_1_16_R1_B_scaffold_194_8
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7073..8305
DNA (1233bp) protein (411aa)
hypothetical protein n=1 Tax=Caldimonas manganoxidans RepID=UPI0003690E7A
transporter
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
SCN18_25_1_16_R1_B_scaffold_194_9
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8302..9282
DNA (981bp) protein (327aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=1416914 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa 3kgm.;"
tRNA delta(2)-isopentenylpyrophosphate transferase n=2 Tax=Pandoraea RepID=V5UDA5_9BURK
tRNA delta(2)-isopentenylpyrophosphate transferase
SCN18_25_1_16_R1_B_scaffold_194_10
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9325..13290)
DNA (3966bp) protein (1322aa)
hypothetical protein n=1 Tax=Thiomonas sp. FB-6 RepID=UPI0003668456
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EEG10072.1}; Flags: Precursor;; TaxID=279714 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Pseudogulbenkiania.;" source="Pseudogulbenkiania ferrooxidans 2002.;"
SCN18_25_1_16_R1_B_scaffold_194_11
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13290..15113)
DNA (1824bp) protein (608aa)
Outer membrane protein, OMP85 family n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RZ56_9BURK
Outer membrane protein, OMP85 family {ECO:0000313|EMBL:EFV93855.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
Surface antigen
SCN18_25_1_16_R1_B_scaffold_194_12
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15127..16188)
DNA (1062bp) protein (354aa)
purM; phosphoribosylaminoimidazole synthetase (AIR synthetase) (EC:6.3.3.1)
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370}; EC=6.3.3.1 {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370};; AIR synthase {ECO:0000256|HAMAP-Rule:MF_00741}; AIRS {ECO:0000256|HAMAP-Rule:MF_00741}; Phosphoribosyl-aminoimidazole synthetase {ECO:0000256|HAMAP-Rule:MF_00741}; TaxID=305 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum (Pseudomonas solanacearum).;"
Phosphoribosylformylglycinamidine cyclo-ligase n=2 Tax=Ralstonia solanacearum RepID=B5SHK3_RALSL
SCN18_25_1_16_R1_B_scaffold_194_13
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16344..17411
DNA (1068bp) protein (356aa)
Putative uncharacterized protein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y0G6_LEPCP
Putative permease often clustered with de novo purine synthesis
Putative permease often clustered with de novo purine synthesis {ECO:0000313|EMBL:AIY43547.1}; TaxID=279058 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas arenae.;"
SCN18_25_1_16_R1_B_scaffold_194_14
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17468..18151
DNA (684bp) protein (228aa)
DnaA regulatory inactivator Hda n=1 Tax=Burkholderia sp. Ch1-1 RepID=I2ICH7_9BURK
DnaA regulatory inactivator Hda
DnaA regulatory inactivator Hda {ECO:0000313|EMBL:EIF28429.1}; TaxID=243261 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. Ch1-1.;"
SCN18_25_1_16_R1_B_scaffold_194_15
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18148..18852
DNA (705bp) protein (235aa)
Had-superfamily subfamily ib, pspase-like protein n=1 Tax=Ralstonia solanacearum (strain Po82) RepID=F6FYU5_RALS8
had-superfamily subfamily ib, pspase-like; protein
Had-superfamily subfamily ib, pspase-like protein {ECO:0000313|EMBL:AEG68178.1}; TaxID=1031711 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum (strain Po82).;"
SCN18_25_1_16_R1_B_scaffold_194_16
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18849..20333
DNA (1485bp) protein (495aa)
pcnB; tRNA nucleotidyltransferase/poly(A) polymerase (EC:2.7.7.19)
Poly(A) polymerase I {ECO:0000256|HAMAP-Rule:MF_00957}; Short=PAP I {ECO:0000256|HAMAP-Rule:MF_00957};; EC=2.7.7.19 {ECO:0000256|HAMAP-Rule:MF_00957};; TaxID=757424 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum seropedicae (strain SmR1).;"
Poly(A) polymerase I n=1 Tax=Herbaspirillum seropedicae (strain SmR1) RepID=D8IYI8_HERSS
SCN18_25_1_16_R1_B_scaffold_194_17
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20342..20860
DNA (519bp) protein (173aa)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC:2.7.6.3)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase {ECO:0000313|EMBL:EWS59389.1}; EC=2.7.6.3 {ECO:0000313|EMBL:EWS59389.1};; TaxID=1437443 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29-B.;"
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SK83_METPP
SCN18_25_1_16_R1_B_scaffold_194_18
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20857..21204
DNA (348bp) protein (116aa)
membrane protein n=1 Tax=Herbaspirillum lusitanum RepID=UPI000315C7BC
Uncharacterized protein {ECO:0000313|EMBL:EJL86714.1}; Flags: Precursor;; TaxID=1144319 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. CF444.;"
hypothetical protein
SCN18_25_1_16_R1_B_scaffold_194_19
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21201..21866
DNA (666bp) protein (222aa)
deoxynucleoside kinase (EC:2.7.1.76)
Deoxyadenosine kinase n=1 Tax=Oxalobacteraceae bacterium IMCC9480 RepID=F1W3V4_9BURK
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
SCN18_25_1_16_R1_B_scaffold_194_20
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21874..22719
DNA (846bp) protein (282aa)
panC; pantoate--beta-alanine ligase (EC:6.3.2.1)
pantoate--beta-alanine ligase n=1 Tax=Variovorax paradoxus RepID=UPI0003728D1E
Tax=CG_Rhodof_04
SCN18_25_1_16_R1_B_scaffold_194_21
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22795..23583)
DNA (789bp) protein (263aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WCA2_ACISJ
hypothetical protein
Tax=RBG_16_Betaproteobacteria_58_11_curated
SCN18_25_1_16_R1_B_scaffold_194_22
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23849..24568)
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82X48_NITEU
DNA-3-methyladenine glycosylase I
Uncharacterized protein {ECO:0000313|EMBL:CAD84358.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
SCN18_25_1_16_R1_B_scaffold_194_23
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24741..25088)
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MU97_9BURK
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
SCN18_25_1_16_R1_B_scaffold_194_24
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25051..25365)
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B1N3_9PROT
hypothetical protein
Tax=CG_Beta_01
SCN18_25_1_16_R1_B_scaffold_194_25
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25428..26219
DNA (792bp) protein (264aa)
SCN18_25_1_16_R1_B_scaffold_194_26
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26091..27542)
DNA (1452bp) protein (484aa)
DNA topoisomerase type IA zn finger domain protein n=1 Tax=Holophaga foetida DSM 6591 RepID=H1NW93_9BACT
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_WOR_2_50_17_curated
SCN18_25_1_16_R1_B_scaffold_194_27
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27611..27916
DNA (306bp) protein (102aa)
Transposition helper protein n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6YM96_9RHOO
Transposition helper protein {ECO:0000313|EMBL:ENO83477.1}; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
istB-like ATP binding family protein
SCN18_25_1_16_R1_B_scaffold_194_28
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28110..28862)
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Acidobacterium sp. (strain MP5ACTX9) RepID=E8WZQ3_ACISM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKD56957.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
SCN18_25_1_16_R1_B_scaffold_194_29
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29522..30028)
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82T32_NITEU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAD86010.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
SCN18_25_1_16_R1_B_scaffold_194_30
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30050..30466)
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82T31_NITEU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAD86011.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
Displaying items 1-30 of 78 in total

View Taxonomy