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SCN18_25_1_16_R1_B_scaffold_315

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Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_1_16_R1_B_scaffold_315_1
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..67)
DNA (66bp) protein (22aa)
SCN18_25_1_16_R1_B_scaffold_315_2
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(404..694)
DNA (291bp) protein (97aa)
Resolvase domain-containing protein n=1 Tax=Cupriavidus sp. HMR-1 RepID=L2EKQ2_9BURK
Resolvase domain-containing protein {ECO:0000313|EMBL:EKZ99945.1}; TaxID=1249621 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HMR-1.;"
resolvase domain-containing protein
SCN18_25_1_16_R1_B_scaffold_315_3
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1258..1782)
DNA (525bp) protein (175aa)
UPI0003CF3425 related cluster n=1 Tax=unknown RepID=UPI0003CF3425
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ESY74080.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
SCN18_25_1_16_R1_B_scaffold_315_4
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1974..2927)
DNA (954bp) protein (318aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TL98_MESCW
sigma-70 family RNA polymerase sigma factor
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:ADV11522.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCN18_25_1_16_R1_B_scaffold_315_5
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3105..3530
DNA (426bp) protein (142aa)
Putative thioesterase n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P609_AROAE
thioesterase
Thioesterase {ECO:0000313|EMBL:BAO29459.1}; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulfuritalea hydrogenivorans sk43H.;"
SCN18_25_1_16_R1_B_scaffold_315_6
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3762..6275
DNA (2514bp) protein (838aa)
Uncharacterized protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RWF1_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EFV95326.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
hypothetical protein
SCN18_25_1_16_R1_B_scaffold_315_7
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6665..7834
DNA (1170bp) protein (390aa)
ABC transporter permease n=1 Tax=Variovorax paradoxus RepID=UPI0003679C1D
Variovorax paradoxus strain MEDvA23 contig_48, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ28459.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
extracellular ligand-binding receptor
SCN18_25_1_16_R1_B_scaffold_315_8
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7919..8800
DNA (882bp) protein (294aa)
Branched-chain amino acid ABC-type transport system, permease component n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WS34_9BURK
Branched-chain amino acid ABC-type transport system, permease component {ECO:0000313|EMBL:EHR72352.1}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
inner-membrane translocator
SCN18_25_1_16_R1_B_scaffold_315_9
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8808..9824
DNA (1017bp) protein (339aa)
Inner-membrane translocator 53 n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HQ42_ACHXA
inner-membrane translocator
Inner-membrane translocator 53 {ECO:0000313|EMBL:ADP18345.1}; TaxID=762376 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans (strain A8).;"
SCN18_25_1_16_R1_B_scaffold_315_10
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9817..10584
DNA (768bp) protein (256aa)
ABC transporter-related protein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y508_LEPCP
ABC transporter-like protein
ABC transporter-related protein {ECO:0000313|EMBL:ACB35904.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
SCN18_25_1_16_R1_B_scaffold_315_11
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10593..11312
DNA (720bp) protein (240aa)
Putative branched amino acid ABC transporter ATP-binding protein n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9HZA2_BORPD
Benzoate transport, ATP binding protein
LIV-I protein F {ECO:0000313|EMBL:CKI05185.1}; TaxID=85698 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Alcaligenes xylosoxydans xylosoxydans (Achromobacter xylosoxidans).;"
SCN18_25_1_16_R1_B_scaffold_315_12
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11368..12579)
DNA (1212bp) protein (404aa)
Iron abc-type transport atpase component {ECO:0000313|EMBL:EIZ05128.1}; EC=3.6.1.3 {ECO:0000313|EMBL:EIZ05128.1};; TaxID=795666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. PBA.;"
ABC transporter ATP-binding protein (EC:3.6.3.25)
iron ABC transporter ATP-binding protein n=1 Tax=Cupriavidus sp. WS RepID=UPI00037FC91A
SCN18_25_1_16_R1_B_scaffold_315_13
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12614..14320
DNA (1707bp) protein (569aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47GS7_DECAR
binding-protein dependent transport system inner membrane protein
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
SCN18_25_1_16_R1_B_scaffold_315_trna_1
unknown

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14332..14405
DNA (74bp)
transferRNA Val
SCN18_25_1_16_R1_B_scaffold_315_14
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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14537..16456
DNA (1920bp) protein (640aa)
thrS; threonyl-tRNA synthetase (EC:6.1.1.3)
Threonine--tRNA ligase n=1 Tax=Herminiimonas arsenicoxydans RepID=SYT_HERAR
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
SCN18_25_1_16_R1_B_scaffold_315_15
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16669..17076
DNA (408bp) protein (136aa)
Translation initiation factor IF-3 n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IRH3_BORPD
infC; translation initiation factor IF-3
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCN18_25_1_16_R1_B_scaffold_315_16
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


17178..17375
DNA (198bp) protein (66aa)
LSU ribosomal protein L35p
50S ribosomal protein L35 id=2036117 bin=GWE2_Gallionellales_58_10 species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE2_Gallionellales_58_10 organism_group=Betaproteobacteria organism_desc=Good, but small
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_57_47_curated
SCN18_25_1_16_R1_B_scaffold_315_17
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


17386..17757
DNA (372bp) protein (124aa)
50S ribosomal protein L20 n=2 Tax=Herbaspirillum RepID=J3D408_9BURK
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1144319 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. CF444.;"
rplT; 50S ribosomal protein L20
SCN18_25_1_16_R1_B_scaffold_315_18
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


17870..18955
DNA (1086bp) protein (362aa)
pheS; phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20)
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HJX5_ACHXA
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_19_curated
SCN18_25_1_16_R1_B_scaffold_315_19
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


18969..21362
DNA (2394bp) protein (798aa)
pheT; phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=266265 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia xenovorans (strain LB400).;"
phenylalanyl-tRNA synthetase subunit beta n=1 Tax=Burkholderia kururiensis RepID=UPI00034777F6
SCN18_25_1_16_R1_B_scaffold_315_20
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21441..21857
DNA (417bp) protein (139aa)
Integration host factor subunit alpha n=1 Tax=Massilia timonae CCUG 45783 RepID=K9DF76_9BURK
Integration host factor subunit alpha {ECO:0000256|HAMAP-Rule:MF_00380, ECO:0000256|RuleBase:RU004485}; Short=IHF-alpha {ECO:0000256|HAMAP-Rule:MF_00380};; TaxID=760117 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia consociata.;"
Integration host factor alpha subunit
SCN18_25_1_16_R1_B_scaffold_315_21
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21895..22305
DNA (411bp) protein (137aa)
Transcriptional regulator, MerR family n=1 Tax=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) RepID=Q1GZS4_METFK
MerR family transcriptional regulator
Transcriptional regulator, MerR family {ECO:0000313|EMBL:ABE50263.1}; TaxID=265072 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylobacillus.;" source="Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875).;"
SCN18_25_1_16_R1_B_scaffold_315_trna_2
unknown

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22349..22422
DNA (74bp)
transferRNA Pro
SCN18_25_1_16_R1_B_scaffold_315_22
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22601..22915
DNA (315bp) protein (105aa)
Transcriptional regulator, AbrB family n=8 Tax=Proteobacteria RepID=C6BE34_RALP1
AbrB family transcriptional regulator
Transcriptional regulator, AbrB family {ECO:0000313|EMBL:ACS61994.1}; TaxID=428406 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii (strain 12D).;"
SCN18_25_1_16_R1_B_scaffold_315_23
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22915..23379
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Ralstonia pickettii (strain 12D) RepID=C6BE33_RALP1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS61993.1}; TaxID=428406 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii (strain 12D).;"
SCN18_25_1_16_R1_B_scaffold_315_24
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23453..23602)
DNA (150bp) protein (50aa)
Alkylhydroperoxidase like protein, AhpD family (Fragment) n=1 Tax=mine drainage metagenome RepID=T1C4Y6_9ZZZZ
alkylhydroperoxidase-like protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCN18_25_1_16_R1_B_scaffold_315_25
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(23551..23922)
DNA (372bp) protein (124aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Alkylhydroperoxidase like protein, AhpD family n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TS15_ALIDB
alkylhydroperoxidase
SCN18_25_1_16_R1_B_scaffold_315_26
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24033..24287)
DNA (255bp) protein (85aa)
Chaperonin n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SGB4_METPP
copZ; chaperonin
Chaperonin {ECO:0000313|EMBL:ABM94603.1}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
SCN18_25_1_16_R1_B_scaffold_315_27
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24395..24877
DNA (483bp) protein (161aa)
Transcriptional regulator, MerR family n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SGB2_METPP
Copper export regulator {ECO:0000313|EMBL:EWS55813.1}; TaxID=1430884 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29.;"
copG; MerR family transcriptional regulator
SCN18_25_1_16_R1_B_scaffold_315_28
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24940..25377)
DNA (438bp) protein (146aa)
camphor resistance protein CrcB n=1 Tax=Lamprocystis purpurea RepID=UPI00037615B1
CrcB protein
Putative fluoride ion transporter CrcB {ECO:0000256|HAMAP-Rule:MF_00454}; TaxID=1469502 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium GJ-E10.;"
Displaying items 1-30 of 49 in total

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