ggKbase home page

SCN18_25_1_16_R1_B_scaffold_321

Search features with annotation key words

Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_1_16_R1_B_scaffold_321_1
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..722)
DNA (720bp) protein (240aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043744}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043720};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1469502 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium GJ-E10.;"
tRNA pseudouridine synthase B n=1 Tax=Burkholderia sp. RPE64 RepID=R4WH66_9BURK
tRNA pseudouridine synthase B
SCN18_25_1_16_R1_B_scaffold_321_2
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(739..1119)
DNA (381bp) protein (127aa)
Ribosome-binding factor A n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RX20_9BURK
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
rbfA; ribosome-binding factor A protein
SCN18_25_1_16_R1_B_scaffold_321_3
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1136..3991)
DNA (2856bp) protein (952aa)
Translation initiation factor IF-2 n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RX21_9BURK
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
infB; translation initiation factor IF-2
SCN18_25_1_16_R1_B_scaffold_321_4
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4064..5581)
DNA (1518bp) protein (506aa)
Transcription termination factor NusA n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RX22_9BURK
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
nusA; transcription elongation factor NusA
SCN18_25_1_16_R1_B_scaffold_321_5
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5578..6165)
DNA (588bp) protein (196aa)
Ribosome maturation protein RimP n=2 Tax=Pandoraea RepID=V5UJG7_9BURK
ribosome maturation protein RimP
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=1380774 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. RB-44.;"
SCN18_25_1_16_R1_B_scaffold_321_6
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6434..8410)
DNA (1977bp) protein (659aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1198452 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. HH01.;"
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI00037B7F3C
hypothetical protein
SCN18_25_1_16_R1_B_scaffold_321_7
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8450..9412)
DNA (963bp) protein (321aa)
Uncharacterized protein n=2 Tax=Ralstonia solanacearum RepID=Q8XZW0_RALSO
Segregation and condensation protein B {ECO:0000256|SAAS:SAAS00086417}; TaxID=1434929 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei ABCPW 111.;"
hypothetical protein
SCN18_25_1_16_R1_B_scaffold_321_8
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9741..10199)
DNA (459bp) protein (153aa)
hypothetical protein n=1 Tax=WS1 bacterium JGI 0000059-K21 RepID=UPI00036705FB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFY82259.1}; TaxID=56110 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Oscillatoria.;" source="Oscillatoria acuminata PCC 6304.;"
SCN18_25_1_16_R1_B_scaffold_321_9
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10214..12370)
DNA (2157bp) protein (719aa)
cell division protein FtsH (EC:3.4.24.-)
Putative mitochondrial ATP-dependent zinc metallopeptidase n=1 Tax=Trypanosoma vivax (strain Y486) RepID=G0U738_TRYVY
Uncharacterized protein {ECO:0000313|EMBL:KGD95221.1}; TaxID=1532557 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter sp. RTa.;"
SCN18_25_1_16_R1_B_scaffold_321_10
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12438..13112)
DNA (675bp) protein (225aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035F8B3B
hypothetical protein
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
SCN18_25_1_16_R1_B_scaffold_321_trna_1
unknown

Not on your lists

13243..13316
DNA (74bp)
transferRNA Met
SCN18_25_1_16_R1_B_scaffold_321_11
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13773..15380
DNA (1608bp) protein (536aa)
ABC transporter, substrate-binding protein, family 5 n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A0F1_9PROT
bacterial extracellular solute-binding s, 5 Middle family protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
SCN18_25_1_16_R1_B_scaffold_321_12
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15437..16624
DNA (1188bp) protein (396aa)
hydrolase n=1 Tax=Desulfitobacterium sp. PCE1 RepID=UPI000367D4B0
amidohydrolase
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
SCN18_25_1_16_R1_B_scaffold_321_13
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16747..17724
DNA (978bp) protein (326aa)
Peptide/nickel transport system permease protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P1N5_AZOS1
ABC transporter permease
ABC transporter permease {ECO:0000313|EMBL:AIB13519.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
SCN18_25_1_16_R1_B_scaffold_321_14
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17721..18557
DNA (837bp) protein (279aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12GF4_POLSJ
binding-protein-dependent transport systems inner membrane component
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
SCN18_25_1_16_R1_B_scaffold_321_15
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18569..19558
DNA (990bp) protein (330aa)
peptide ABC transporter ATP-binding protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI00036E878F
putative peptide ABC transporter, ATP-binding protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
SCN18_25_1_16_R1_B_scaffold_321_16
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19555..20598
DNA (1044bp) protein (348aa)
Oligopeptide/dipeptide ABC transporter, ATPase subunit n=1 Tax=Rhodobacter sphaeroides WS8N RepID=F3U4D4_RHOSH
oligopeptide/dipeptide ABC transporter, ATPase subunit
Oligopeptide/dipeptide ABC transporter, ATPase subunit {ECO:0000313|EMBL:ABN79225.1}; TaxID=349101 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9).;"
SCN18_25_1_16_R1_B_scaffold_321_17
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20612..22960
DNA (2349bp) protein (783aa)
Trimethylamine-N-oxide reductase (cytochrome c) (EC:1.7.2.3)
Anaerobic dehydrogenase, typically selenocysteine-containing n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z257_9RHIZ
Anaerobic dehydrogenase, typically selenocysteine-containing {ECO:0000313|EMBL:EIM30299.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
SCN18_25_1_16_R1_B_scaffold_321_18
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22957..23601
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=SAR116 cluster alpha proteobacterium HIMB100 RepID=G6A0C5_9PROT
Glyoxalase {ECO:0000313|EMBL:KEJ89017.1}; TaxID=1300350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter donghicola DSW-25 = KCTC 12864 = JCM 14565.;"
hypothetical protein
SCN18_25_1_16_R1_B_scaffold_321_19
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23667..24440)
DNA (774bp) protein (258aa)
Enoyl-CoA hydratase/isomerase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V708_SPHWW
Enoyl-CoA hydratase {ECO:0000313|EMBL:KDP88327.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
enoyl-CoA hydratase/isomerase
SCN18_25_1_16_R1_B_scaffold_321_20
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24430..25059)
DNA (630bp) protein (210aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002E7E836
Cysteine dioxygenase type I {ECO:0000313|EMBL:ELA01026.1}; TaxID=1249621 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HMR-1.;"
cysteine dioxygenase type I
SCN18_25_1_16_R1_B_scaffold_321_21
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25056..26240)
DNA (1185bp) protein (395aa)
L-carnitine dehydratase/bile acid-inducible protein F (EC:2.8.3.16)
Carnitine dehydratase n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2JDN0_9BURK
Carnitine dehydratase {ECO:0000313|EMBL:KJK25460.1}; TaxID=1619952 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 16.;"
SCN18_25_1_16_R1_B_scaffold_321_22
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26295..27467)
DNA (1173bp) protein (391aa)
metC; cystathionine beta-lyase (EC:4.4.1.8)
Cystathionine beta-lyase {ECO:0000313|EMBL:KDD50839.1}; EC=4.4.1.8 {ECO:0000313|EMBL:KDD50839.1};; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica OSU553.;"
Cystathionine beta-lyase n=6 Tax=Bordetella bronchiseptica RepID=K0MRM4_BORBM
SCN18_25_1_16_R1_B_scaffold_321_23
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27486..29018)
DNA (1533bp) protein (511aa)
Probable aldehyde dehydrogenase n=2 Tax=Bordetella bronchiseptica RepID=K0MSD2_BORBM
aldehyde dehydrogenase
Probable aldehyde dehydrogenase {ECO:0000313|EMBL:CCN21451.1}; TaxID=1208657 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 1289.;"
SCN18_25_1_16_R1_B_scaffold_321_24
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29434..30192)
DNA (759bp) protein (253aa)
IclR family transcriptional regulator n=1 Tax=Cupriavidus sp. WS RepID=UPI00036E04F4
IclR family transcriptional regulator {ECO:0000313|EMBL:KDP88330.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
Transcriptional regulator, IclR family
SCN18_25_1_16_R1_B_scaffold_321_25
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30350..31012)
DNA (663bp) protein (221aa)
Uncharacterized protein n=2 Tax=Proteobacteria RepID=A7TX89_9BURK
Hypothetical conserved protein {ECO:0000313|EMBL:ADU55732.1}; TaxID=941394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 11BF10.;"
hypothetical protein
SCN18_25_1_16_R1_B_scaffold_321_26
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31255..32694
DNA (1440bp) protein (480aa)
ATP synthase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01347};; ATP synthase F1 sector subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; F-ATPase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
atpD; F0F1 ATP synthase subunit beta (EC:3.6.3.14)
ATP synthase subunit beta n=1 Tax=Methylocystis sp. (strain SC2) RepID=I4EAL5_METSZ
SCN18_25_1_16_R1_B_scaffold_321_27
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32691..33146
DNA (456bp) protein (152aa)
ATP synthase F1 sub-complex, epsilon subunit {ECO:0000313|EMBL:CCD32019.1}; EC=3.6.3.14 {ECO:0000313|EMBL:CCD32019.1};; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
F0F1 ATP synthase subunit epsilon (EC:3.6.3.14)
ATP synthase F1 sub-complex, epsilon subunit n=1 Tax=Methylocystis sp. (strain SC2) RepID=I4EAL4_METSZ
SCN18_25_1_16_R1_B_scaffold_321_28
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33143..33472
DNA (330bp) protein (110aa)
H(+)-transporting ATP synthase, protein 1 n=1 Tax=Methylocystis sp. (strain SC2) RepID=I4EAL3_METSZ
H(+)-transporting ATP synthase, protein 1 {ECO:0000313|EMBL:CCD32018.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
F0F1-ATPase subunit (H+transporting ATP synthase1)
SCN18_25_1_16_R1_B_scaffold_321_29
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33469..33753
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Methylocystis sp. (strain SC2) RepID=I4EAL2_METSZ
Uncharacterized protein {ECO:0000313|EMBL:CCD32017.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
hypothetical protein
Displaying items 1-30 of 54 in total

View Taxonomy