ggKbase home page

SCN18_25_1_16_R1_B_scaffold_796

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_1_16_R1_B_scaffold_796_1
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..945)
DNA (945bp) protein (315aa)
Aminomethyltransferase {ECO:0000256|RuleBase:RU003981}; EC=2.1.2.10 {ECO:0000256|RuleBase:RU003981};; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
glycine cleavage system T protein (EC:2.1.2.10)
Aminomethyltransferase n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RY80_9BURK
SCN18_25_1_16_R1_B_scaffold_796_2
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1000..3963)
DNA (2964bp) protein (988aa)
Glycine dehydrogenase (decarboxylating) {ECO:0000256|HAMAP-Rule:MF_00711}; EC=1.4.4.2 {ECO:0000256|HAMAP-Rule:MF_00711};; Glycine cleavage system P-protein {ECO:0000256|HAMAP-Rule:MF_00711}; Glycine decarboxylase {ECO:0000256|HAMAP-Rule:MF_00711}; Glycine dehydrogenase (aminomethyl-transferring) {ECO:0000256|HAMAP-Rule:MF_00711}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
gcvP1; glycine dehydrogenase (EC:1.4.4.2)
Glycine dehydrogenase (decarboxylating) n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RY79_9BURK
SCN18_25_1_16_R1_B_scaffold_796_3
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3968..4354)
DNA (387bp) protein (129aa)
Glycine cleavage system H protein n=1 Tax=Thioflavicoccus mobilis 8321 RepID=L0GYJ4_9GAMM
Glycine cleavage system H protein {ECO:0000256|HAMAP-Rule:MF_00272}; TaxID=1461581 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 12M76_air.;"
glycine cleavage system H protein
SCN18_25_1_16_R1_B_scaffold_796_4
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4655..5662)
DNA (1008bp) protein (336aa)
Pyridoxal-5'-phosphate-dependent protein beta subunit n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IFH3_METNO
pyridoxal-5'-phosphate-dependent protein subunit beta
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
SCN18_25_1_16_R1_B_scaffold_796_5
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5990..6544
DNA (555bp) protein (185aa)
carboxylesterase
Carboxylesterase id=3732186 bin=GWA2_Methylomirabilis_73_35 species=Alcaligenes faecalis genus=Alcaligenes taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
SCN18_25_1_16_R1_B_scaffold_796_6
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6441..7154)
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P3B9_AROAE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAI08195.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
SCN18_25_1_16_R1_B_scaffold_796_7
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7151..7756)
DNA (606bp) protein (202aa)
Electron transport protein SCO1/SenC n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P3C0_AROAE
electron transport protein SCO1/SenC
Electron transport protein SCO1/SenC {ECO:0000313|EMBL:CAI08194.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
SCN18_25_1_16_R1_B_scaffold_796_8
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7753..9243)
DNA (1491bp) protein (497aa)
coxA2; cytochrome c oxidase subunit I (EC:1.9.3.1)
Cytochrome c oxidase, subunit I (EC 1.9.3.1) n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P3C1_AROAE
Cytochrome c oxidase, subunit I (EC 1.9.3.1) {ECO:0000313|EMBL:CAI08193.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
SCN18_25_1_16_R1_B_scaffold_796_9
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9253..9786)
DNA (534bp) protein (178aa)
coxB2; cytochrome-c oxidase subunit II (EC:1.9.3.1)
Probable cytochrome-c oxidase subunit II {ECO:0000313|EMBL:CAI08192.1}; EC=1.9.3.1 {ECO:0000313|EMBL:CAI08192.1};; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
Probable cytochrome-c oxidase subunit II n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P3C2_AROAE
SCN18_25_1_16_R1_B_scaffold_796_10
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9783..10073)
DNA (291bp) protein (97aa)
SCN18_25_1_16_R1_B_scaffold_796_11
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10242..11648
DNA (1407bp) protein (469aa)
Sigma-54 dependent DNA-binding response regulator n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P3C3_AROAE
Fis family transcriptional regulator
Sigma-54 dependent DNA-binding response regulator {ECO:0000313|EMBL:CAI08191.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
SCN18_25_1_16_R1_B_scaffold_796_12
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11653..13047)
DNA (1395bp) protein (465aa)
(R)-6-hydroxynicotine oxidase (EC:1.5.3.6)
(R)-6-hydroxynicotine oxidase {ECO:0000313|EMBL:AEB12661.1}; EC=1.5.3.6 {ECO:0000313|EMBL:AEB12661.1};; TaxID=869210 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Marinithermus.;" source="Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1).;"
(R)-6-hydroxynicotine oxidase n=1 Tax=Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1) RepID=F2NKK1_MARHT
SCN18_25_1_16_R1_B_scaffold_796_13
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13229..13486
DNA (258bp) protein (86aa)
hypothetical protein n=1 Tax=Burkholderia sp. WSM4176 RepID=UPI0003746F7D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG20295.1}; TaxID=640511 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. (strain CCGE1002).;"
SCN18_25_1_16_R1_B_scaffold_796_14
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13533..16628)
DNA (3096bp) protein (1032aa)
Transcriptional regulator, LuxR family n=1 Tax=Variovorax paradoxus B4 RepID=T1XCT4_VARPD
transcriptional regulator, LuxR family
Transcriptional regulator, LuxR family {ECO:0000313|EMBL:AGU50742.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCN18_25_1_16_R1_B_scaffold_796_15
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16733..18289
DNA (1557bp) protein (519aa)
FAD linked oxidase domain protein n=2 Tax=Burkholderia cenocepacia RepID=A0K4R0_BURCH
glycolate oxidase subunit GlcD
Glycolate oxidase subunit GlcD {ECO:0000313|EMBL:AJC23029.1}; TaxID=93221 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pulmonicola.;"
SCN18_25_1_16_R1_B_scaffold_796_16
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18306..18431)
DNA (126bp) protein (42aa)
transposase IS110 n=1 Tax=Ideonella sp. B508-1 RepID=UPI000349B89E
Transposase {ECO:0000313|EMBL:EWS52482.1}; TaxID=1430884 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29.;"
ISBcen8-like transposase, IS110 family
Displaying 16 items

View Taxonomy