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SCN18_25_1_16_R1_B_scaffold_297

Search features with annotation key words

Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_1_16_R1_B_scaffold_297_1
SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1215)
DNA (1215bp) protein (405aa)
Membrane protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QM38_NITHX
membrane protein
Membrane protein {ECO:0000313|EMBL:ABE62709.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_25_1_16_R1_B_scaffold_297_2
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1474..3072
DNA (1599bp) protein (533aa)
RNA-metabolising metallo-beta-lactamase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QM41_NITHX
RNA-metabolising metallo-beta-lactamase
RNA-metabolising metallo-beta-lactamase {ECO:0000313|EMBL:ABE62706.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_25_1_16_R1_B_scaffold_297_3
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3104..3595)
DNA (492bp) protein (164aa)
Putative signal-transduction protein with CBS domains n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QM42_NITHX
signal-transduction protein
Putative signal-transduction protein with CBS domains {ECO:0000313|EMBL:ABE62705.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_25_1_16_R1_B_scaffold_297_4
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3777..3965
DNA (189bp) protein (63aa)
SCN18_25_1_16_R1_B_scaffold_297_5
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4767..5234
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D3J0_BRAJP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KGT80934.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
SCN18_25_1_16_R1_B_scaffold_297_6
CN-SCN_Lautropia_15x, CN-SCN_Lautropia_15x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5303..5749)
DNA (447bp) protein (149aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00035FEAD6
Acetolactate synthase I/II/III large subunit {ECO:0000313|EMBL:ERF84294.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein
SCN18_25_1_16_R1_B_scaffold_297_7
unknown

Not on your lists

comp(6147..6617)
DNA (471bp) protein (157aa)

This feature has no annotations

SCN18_25_1_16_R1_B_scaffold_297_8
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6721..6894
DNA (174bp) protein (58aa)
Putative uncharacterized protein n=1 Tax=uncultured bacterium 888 RepID=B8R8N6_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:ACF98042.1}; TaxID=548896 species="Bacteria; environmental samples.;" source="uncultured bacterium 888.;"
hypothetical protein
SCN18_25_1_16_R1_B_scaffold_297_9
CN-SCN_Lautropia_89x, CN-SCN_Lautropia_89x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6906..7457
DNA (552bp) protein (184aa)
Cytochrome c oxidase (B(O/a)3-type) chain II n=1 Tax=Thalassobacter arenae DSM 19593 RepID=S9QC57_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KKN61729.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Heme/copper-type cytochrome/quinol oxidase, subunit 2
SCN18_25_1_16_R1_B_scaffold_297_10
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7459..9183
DNA (1725bp) protein (575aa)
Cytochrome c oxidase (B(O/a)3-type) chain I n=1 Tax=Thalassobacter arenae DSM 19593 RepID=S9RTA5_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KKN61728.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Heme/copper-type cytochrome/quinol oxidase, subunit 1
SCN18_25_1_16_R1_B_scaffold_297_11
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9208..10866
DNA (1659bp) protein (553aa)
Protoheme IX farnesyltransferase n=1 Tax=Thalassobacter arenae DSM 19593 RepID=S9RGG0_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KKN61727.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
protoheme IX farnesyltransferase
SCN18_25_1_16_R1_B_scaffold_297_12
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10863..12428
DNA (1566bp) protein (522aa)
Cytochrome b/b6-like protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11MU7_MESSB
cytochrome b/b6-like
Cytochrome b/b6-like protein {ECO:0000313|EMBL:ABG61272.1}; Flags: Precursor;; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCN18_25_1_16_R1_B_scaffold_297_13
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12425..12937
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11MU8_MESSB
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
SCN18_25_1_16_R1_B_scaffold_297_14
SCNpilot_P_inoc_Rhodobacter_64_50, SCNpilot_P_inoc_Rhodobacter_64_50, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13045..13818
DNA (774bp) protein (258aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003650936
Crp/Fnr family transcription regulator
Crp/Fnr family transcription regulator {ECO:0000313|EMBL:AHB48236.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
SCN18_25_1_16_R1_B_scaffold_297_15
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13833..14216)
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V3B8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEG07056.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
SCN18_25_1_16_R1_B_scaffold_297_16
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14258..15607)
DNA (1350bp) protein (450aa)
Coproporphyrinogen-III oxidase {ECO:0000256|PIRNR:PIRNR000167}; EC=1.3.99.22 {ECO:0000256|PIRNR:PIRNR000167};; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
coproporphyrinogen III oxidase n=1 Tax=Methylobacterium sp. MB200 RepID=UPI000346AD39
hemN; coproporphyrinogen III oxidase
SCN18_25_1_16_R1_B_scaffold_297_17
SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16137..16832
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWX9_9RHIZ
Fe(2+)/Mn(2+) transporter pcl1 {ECO:0000313|EMBL:CDN92201.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
hypothetical protein
SCN18_25_1_16_R1_B_scaffold_297_18
unknown

Not on your lists

17117..17314
DNA (198bp) protein (66aa)

This feature has no annotations

SCN18_25_1_16_R1_B_scaffold_297_19
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17329..17619
DNA (291bp) protein (97aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI000369AD80
Uncharacterized protein {ECO:0000313|EMBL:KJS08198.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
hypothetical protein
SCN18_25_1_16_R1_B_scaffold_297_20
SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19157..19441)
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4R198_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESR25762.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
hypothetical protein
SCN18_25_1_16_R1_B_scaffold_297_21
SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19903..20622)
DNA (720bp) protein (240aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00015172}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00015172};; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
PpiC-type peptidyl-prolyl cis-trans isomerase n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B5K8_9RHIZ
PpiC-type peptidyl-prolyl cis-trans isomerase
SCN18_25_1_16_R1_B_scaffold_297_22
SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20619..21338)
DNA (720bp) protein (240aa)
Respiratory nitrate reductase subunit gamma n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B7R5_9RHIZ
respiratory nitrate reductase subunit gamma
Respiratory nitrate reductase subunit gamma {ECO:0000313|EMBL:AGK58307.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCN18_25_1_16_R1_B_scaffold_297_23
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21353..21988)
DNA (636bp) protein (212aa)
Nitrate reductase molybdenum cofactor assembly chaperone n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BCP6_9RHIZ
nitrate reductase molybdenum cofactor assembly chaperone
Nitrate reductase molybdenum cofactor assembly chaperone {ECO:0000313|EMBL:AGK58306.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCN18_25_1_16_R1_B_scaffold_297_24
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21999..23531)
DNA (1533bp) protein (511aa)
Nitrate reductase A subunit beta n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BDU8_9RHIZ
narH; nitrate reductase A subunit beta
Nitrate reductase A subunit beta {ECO:0000313|EMBL:AGK58305.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCN18_25_1_16_R1_B_scaffold_297_25
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23528..27286)
DNA (3759bp) protein (1253aa)
Respiratory nitrate reductase subunit alpha NarG n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B455_9RHIZ
Respiratory nitrate reductase subunit alpha NarG {ECO:0000313|EMBL:AGK58304.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
respiratory nitrate reductase subunit alpha NarG
SCN18_25_1_16_R1_B_scaffold_297_26
SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27305..28567)
DNA (1263bp) protein (421aa)
Major facilitator superfamily MFS_1 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QKJ8_NITHX
major facilitator transporter
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABE63249.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_25_1_16_R1_B_scaffold_297_27
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29940..30797
DNA (858bp) protein (286aa)
Succinate dehydrogenase iron-sulfur subunit {ECO:0000256|RuleBase:RU361237}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU361237};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
succinate dehydrogenase and fumarate reductase iron-sulfur protein (EC:1.3.5.1)
Succinate dehydrogenase iron-sulfur subunit n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE66_9GAMM
SCN18_25_1_16_R1_B_scaffold_297_28
CN-SCN_Arenimonas_307x, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30808..31215
DNA (408bp) protein (136aa)
Succinate dehydrogenase, cytochrome b subunit n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE65_9GAMM
Succinate dehydrogenase, cytochrome b subunit {ECO:0000313|EMBL:EIL97756.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
succinate dehydrogenase, cytochrome b subunit
SCN18_25_1_16_R1_B_scaffold_297_29
SCNPILOT_SOLID_1_TRIM150_Rhodanobacter_67_12, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31215..31613
DNA (399bp) protein (133aa)
Succinate dehydrogenase hydrophobic membrane anchor protein n=1 Tax=Caenispirillum salinarum AK4 RepID=K9H2Y8_9PROT
Succinate dehydrogenase {ECO:0000313|EMBL:KJR66124.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
sdhD; Succinate dehydrogenase, hydrophobic membrane anchor subunit
SCN18_25_1_16_R1_B_scaffold_297_30
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31665..32111
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GTQ5_PUSST
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEC21019.1}; TaxID=1007105 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Pusillimonas.;" source="Pusillimonas sp. (strain T7-7).;"
Displaying items 1-30 of 52 in total

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