ggKbase home page

SCN18_25_1_16_R1_B_scaffold_726

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_1_16_R1_B_scaffold_726_1
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..2440)
DNA (2439bp) protein (813aa)
ATPase AAA-2 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQC9_NITHX
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
ATPase
SCN18_25_1_16_R1_B_scaffold_726_2
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2658..3077)
DNA (420bp) protein (140aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QJ60_9BRAD
TIGR02594 family protein {ECO:0000313|EMBL:EKS32729.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCN18_25_1_16_R1_B_scaffold_726_3
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3673..4536
DNA (864bp) protein (288aa)
Alpha/beta hydrolase fold n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q20YI3_RHOPB
Alpha/beta hydrolase {ECO:0000313|EMBL:KIZ34590.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
alpha/beta hydrolase fold protein
SCN18_25_1_16_R1_B_scaffold_726_4
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4657..5325)
DNA (669bp) protein (223aa)
Methionine biosynthesis MetW n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQD2_NITHX
methionine biosynthesis MetW
Methionine biosynthesis MetW {ECO:0000313|EMBL:ABE61565.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_25_1_16_R1_B_scaffold_726_5
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5327..6523)
DNA (1197bp) protein (399aa)
metX; homoserine O-acetyltransferase (EC:2.3.1.31)
Homoserine O-acetyltransferase {ECO:0000255|HAMAP-Rule:MF_00296}; EC=2.3.1.31 {ECO:0000255|HAMAP-Rule:MF_00296};; Homoserine O-trans-acetylase {ECO:0000255|HAMAP-Rule:MF_00296}; Short=HTA {ECO:0000255|HAMAP-Rule:MF_00296};; Short=Homoserine transacetylase {ECO:0000255|HAMAP-Rule:MF_00296};; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
Homoserine O-acetyltransferase n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=METX_NITWN
SCN18_25_1_16_R1_B_scaffold_726_6
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6859..7710
DNA (852bp) protein (284aa)
Chorismate mutase n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07IG9_RHOP5
hypothetical protein
Chorismate mutase {ECO:0000313|EMBL:ABJ08265.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCN18_25_1_16_R1_B_scaffold_726_7
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7738..8835
DNA (1098bp) protein (366aa)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
histidinol-phosphate aminotransferase (EC:2.6.1.9)
histidinol-phosphate aminotransferase n=1 Tax=Bradyrhizobium elkanii RepID=UPI000379FE57
SCN18_25_1_16_R1_B_scaffold_726_8
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8832..9767
DNA (936bp) protein (312aa)
cyclohexadienyl dehydrogenase (EC:1.3.1.12)
Prephenate dehydrogenase {ECO:0000313|EMBL:ABE41321.1}; EC=1.3.1.12 {ECO:0000313|EMBL:ABE41321.1};; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
Prephenate dehydrogenase n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q131B8_RHOPS
SCN18_25_1_16_R1_B_scaffold_726_9
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9910..10395
DNA (486bp) protein (162aa)
alkyl hydroperoxide reductase n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003604142
alkyl hydroperoxide reductase
Alkyl hydroperoxide reductase {ECO:0000313|EMBL:KIZ44406.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
SCN18_25_1_16_R1_B_scaffold_726_10
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10677..11594)
DNA (918bp) protein (306aa)
2-nitropropane dioxygenase NPD n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3QGJ6_RHOPT
2-nitropropane dioxygenase
2-nitropropane dioxygenase NPD {ECO:0000313|EMBL:ACF02673.1}; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
SCN18_25_1_16_R1_B_scaffold_726_11
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11721..12197)
DNA (477bp) protein (159aa)
Ribonuclease H {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437}; Short=RNase H {ECO:0000256|HAMAP-Rule:MF_00042};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437};; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
rnhA; ribonuclease H (EC:3.1.26.4)
Ribonuclease H n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TQA5_9BRAD
SCN18_25_1_16_R1_B_scaffold_726_12
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12194..13174)
DNA (981bp) protein (327aa)
Homoserine kinase {ECO:0000256|HAMAP-Rule:MF_00301, ECO:0000256|SAAS:SAAS00085804}; Short=HK {ECO:0000256|HAMAP-Rule:MF_00301};; Short=HSK {ECO:0000256|HAMAP-Rule:MF_00301};; EC=2.7.1.39 {ECO:0000256|HAMAP-Rule:MF_00301, ECO:0000256|SAAS:SAAS00085809};; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
thrB; homoserine kinase (EC:2.7.1.39)
Homoserine kinase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V781_9BRAD
SCN18_25_1_16_R1_B_scaffold_726_13
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13181..14143)
DNA (963bp) protein (321aa)
ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SP49_NITWN
SCN18_25_1_16_R1_B_scaffold_726_14
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14417..15112
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WTU3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ36664.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
hypothetical protein
SCN18_25_1_16_R1_B_scaffold_726_15
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15277..15552)
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QH26_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE64471.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_25_1_16_R1_B_scaffold_726_16
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15702..17612)
DNA (1911bp) protein (637aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P4R4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS33418.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
AMP-dependent synthetase and ligase
SCN18_25_1_16_R1_B_scaffold_726_17
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17713..18585)
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NSU1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS33417.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
peptidase C14 caspase catalytic subunit p20
SCN18_25_1_16_R1_B_scaffold_726_18
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18585..19388)
DNA (804bp) protein (268aa)
3-oxoacyl-ACP reductase n=1 Tax=Bradyrhizobium japonicum RepID=UPI00036E6E29
3-oxoacyl-ACP reductase {ECO:0000313|EMBL:KJC54700.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
dehydrogenase
SCN18_25_1_16_R1_B_scaffold_726_19
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19501..20802
DNA (1302bp) protein (434aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NSK5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS32111.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
Displaying 19 items

View Taxonomy