ggKbase home page

SCN18_25_1_16_R1_B_scaffold_1172

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_1_16_R1_B_scaffold_1172_1
SCNPILOT_CONT_500_BF_Cellulomonas_73_12_partial, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..312)
DNA (312bp) protein (104aa)
SCN18_25_1_16_R1_B_scaffold_1172_2
SCNPILOT_CONT_500_BF_Cellulomonas_73_12_partial, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(356..1183)
DNA (828bp) protein (276aa)
short-chain dehydrogenase n=1 Tax=Cellulomonas sp. JC225 RepID=UPI00031B594F
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADG75862.1}; TaxID=446466 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS; 134).;"
SCN18_25_1_16_R1_B_scaffold_1172_3
SCNPILOT_CONT_500_BF_Cellulomonas_73_12_partial, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1321..4281
DNA (2961bp) protein (987aa)
ATP-dependent DNA helicase RecQ n=1 Tax=Cellvibrio gilvus (strain ATCC 13127 / NRRL B-14078) RepID=F8A4L6_CELGA
ATP-dependent DNA helicase RecQ
ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:AEI13264.1}; TaxID=593907 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellvibrio gilvus (strain ATCC 13127 / NRRL B-14078).;"
SCN18_25_1_16_R1_B_scaffold_1172_4
SCNPILOT_EXPT_750_BF_Plasmid_64_137, SCNPILOT_EXPT_750_BF_Plasmid_64_137, SCNPILOT_EXPT_750_BF_Plasmid_64_137, SCNPILOT_EXPT_750_BF_Plasmid_64_137, SCNPILOT_EXPT_750_BF_Plasmid_64_137, Plasmid-like

Not on your lists

comp(4298..4573)
DNA (276bp) protein (92aa)
Plasmid stabilization system n=1 Tax=mine drainage metagenome RepID=T1B5P8_9ZZZZ
Plasmid stabilization system {ECO:0000313|EMBL:EQD68206.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
putative protein y4kP
SCN18_25_1_16_R1_B_scaffold_1172_5
SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4608..4826)
DNA (219bp) protein (73aa)
Uncharacterized protein n=3 Tax=Pseudomonas RepID=J2R293_9PSED
Uncharacterized protein {ECO:0000313|EMBL:EJM62034.1}; TaxID=1144332 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM50.;"
stability determinant
SCN18_25_1_16_R1_B_scaffold_1172_6
Castellaniella defragrans_SCNPILOT_SOLID2_TRIM150_Castellaniella_66_80, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4880..5383)
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GP78_PUSST
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDM24586.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
SCN18_25_1_16_R1_B_scaffold_1172_7
Castellaniella defragrans_SCNPILOT_SOLID2_TRIM150_Castellaniella_66_80, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5419..5676)
DNA (258bp) protein (86aa)
hypothetical protein n=1 Tax=Methylomicrobium buryatense RepID=UPI00034DE4F0
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDM24586.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
SCN18_25_1_16_R1_B_scaffold_1172_8
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5855..6127)
DNA (273bp) protein (91aa)
Uncharacterized protein n=21 Tax=Burkholderia pseudomallei RepID=I1WR20_BURPE
Uncharacterized protein {ECO:0000313|EMBL:KDR34729.1}; TaxID=1071679 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia grimmiae.;"
hypothetical protein
SCN18_25_1_16_R1_B_scaffold_1172_9
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6133..6270)
DNA (138bp) protein (46aa)
hypothetical protein
SCN18_25_1_16_R1_B_scaffold_1172_10
scnpilot_dereplicated_Plasmid_Burkholderiales_2, scnpilot_dereplicated_Plasmid_Burkholderiales_2, scnpilot_dereplicated_Plasmid_Burkholderiales_2, scnpilot_dereplicated_Plasmid_Burkholderiales_2, scnpilot_dereplicated_Plasmid_Burkholderiales_2, Plasmid-like

Not on your lists

6609..7184
DNA (576bp) protein (192aa)
serine acetyltransferase n=1 Tax=Oligella ureolytica RepID=UPI000360E387
wbpD; acetyltransferase
Uncharacterized protein {ECO:0000313|EMBL:ENU28689.1}; TaxID=1217711 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter.;" source="Acinetobacter sp. NIPH 236.;"
SCN18_25_1_16_R1_B_scaffold_1172_11
Acidovorax sp. KKS102_CN-SCN_Acidovorax_28x, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7210..8301
DNA (1092bp) protein (364aa)
glutamine--scyllo-inositol transaminase (EC:2.6.1.50)
Glutamine--scyllo-inositol transaminase {ECO:0000313|EMBL:ABR73488.1}; EC=2.6.1.50 {ECO:0000313|EMBL:ABR73488.1};; TaxID=339671 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Actinobacillus.;" source="Actinobacillus succinogenes (strain ATCC 55618 / 130Z).;"
Glutamine--scyllo-inositol transaminase n=1 Tax=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) RepID=A6VKJ1_ACTSZ
SCN18_25_1_16_R1_B_scaffold_1172_12
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8338..9282
DNA (945bp) protein (315aa)
Oxidoreductase family, NAD-binding Rossmann fold family protein n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HQE5_ACHXA
oxidoreductase family, NAD-binding Rossmann fold family protein
Oxidoreductase family, NAD-binding Rossmann fold family protein {ECO:0000313|EMBL:ADP19579.1}; TaxID=762376 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans (strain A8).;"
SCN18_25_1_16_R1_B_scaffold_1172_13
SCNPILOT_EXPT_300_BF_Thiobacillus_62_448, SCNPILOT_EXPT_300_BF_Thiobacillus_62_448, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9279..9614
DNA (336bp) protein (112aa)
Transcriptional regulator, MarR family n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6T0C7_JANMA
MarR family transcriptional regulator
MarR family transcriptional regulator {ECO:0000313|EMBL:BAO31151.1}; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulfuritalea hydrogenivorans sk43H.;"
SCN18_25_1_16_R1_B_scaffold_1172_14
SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10323..11777
DNA (1455bp) protein (485aa)
ABC transporter related protein n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BS65_9GAMM
ABC transporter related protein {ECO:0000313|EMBL:EIJ34208.1}; Flags: Precursor;; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
ABC transporter-like protein
Displaying 14 items

View Taxonomy