ggKbase home page

SCN18_25_1_16_R2_B_scaffold_105_107

Organism: SCN18_25_1_16_R2_B_SCNPILOT_CONT_300_BF_Rhizobiales_62_47-related_62_30

near complete RP 51 / 55 MC: 2 BSCG 51 / 51 ASCG 11 / 38
Location: comp(110721..111257)

Top 3 Functional Annotations

Value Algorithm Source
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 93.3
  • Coverage: 178.0
  • Bit_score: 338
  • Evalue 3.80e-90
2',5' RNA ligase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQR0_NITHX similarity UNIREF
DB: UNIREF100
  • Identity: 93.3
  • Coverage: 178.0
  • Bit_score: 338
  • Evalue 2.70e-90
2',5' RNA ligase similarity KEGG
DB: KEGG
  • Identity: 93.3
  • Coverage: 178.0
  • Bit_score: 338
  • Evalue 7.60e-91

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNPILOT_CONT_300_BF_Rhizobiales_62_47 → SCNPILOT_CONT_300_BF_Rhizobiales_62_47 → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 537
ATGCCGCGTTTGTTCACCGGGCTGGAAATCCCGCCCGATATCGGCCGGACGTTGTCCGGGTTGCGCGGTGGCCTGCCAGGCGCCCGCTGGGTCGATCCCGAAAACTATCACCTCACACTCCGCTTCATCGGCGATATCGACGGCATCTCCGCCAACGAAATTGCGTCGGTGCTGTTTCGTGTGAATCGAAAACCGTTCGAGGTGACGCTGCGGGGGCTGTCGAGTTTCGGCGGCAAGAAACCGCGCGCGGTCGTCGCCTCGGTGGAGCCGAGCCGGCCGCTGATCGAACTGCAGGCCGAGCTCGAACGGCTGGTGCGGCGCTGCGGGCTCGATCCGGAAGGCCGCAAGTTCACGCCGCATGTCACGCTGGCGCGGCTGCGCGACGCCACCAATCAGGATGTCGCGGATTACCTGTCGGTGCGCGGCTATTTCCCGACCAAGGTCTTCACCGCCGAGCGCTTCGTGCTGTTTTCCTCGCGTGCATCGGTCGGCGGCGGCCCCTATGTGGTCGAGGATTCCTACGCGCTGAGCGCATGA
PROTEIN sequence
Length: 179
MPRLFTGLEIPPDIGRTLSGLRGGLPGARWVDPENYHLTLRFIGDIDGISANEIASVLFRVNRKPFEVTLRGLSSFGGKKPRAVVASVEPSRPLIELQAELERLVRRCGLDPEGRKFTPHVTLARLRDATNQDVADYLSVRGYFPTKVFTAERFVLFSSRASVGGGPYVVEDSYALSA*