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SCN18_25_1_16_R5_B_scaffold_1062

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_1_16_R5_B_scaffold_1062_1
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..384)
DNA (384bp) protein (128aa)
Branched-chain amino acid ABC transporter amino acid-binding protein n=2 Tax=Bradyrhizobiaceae RepID=F7QKB2_9BRAD
extracellular ligand-binding receptor
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_25_1_16_R5_B_scaffold_1062_2
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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670..1473
DNA (804bp) protein (268aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037155B7
IclR helix-turn-helix protein {ECO:0000313|EMBL:EHM01808.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
IclR family transcriptional regulator
SCN18_25_1_16_R5_B_scaffold_1062_3
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1629..2348
DNA (720bp) protein (240aa)
Putative cyclase n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=Q3AE78_CARHZ
cyclase
Tax=RBG_13_Bathyarchaeota_38_9_curated
SCN18_25_1_16_R5_B_scaffold_1062_4
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2383..3252
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PRZ3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42275.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
inner-membrane translocator
SCN18_25_1_16_R5_B_scaffold_1062_5
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3255..5036
DNA (1782bp) protein (594aa)
Amino acid/amide ABC transporter membrane protein 2, HAAT family, amino acid/amide ABC transporter ATP-binding protein 1, HAAT family n=1 Tax=Desulfosporosinus acidiphilus (strain DSM 22704 / JCM 16185 / SJ4) RepID=I4D771_DESAJ
amino acid/amide ABC transporter membrane protein 2, HAAT family, amino acid/amide ABC transporter ATP-binding protein 1, HAAT family
Amino acid/amide ABC transporter membrane protein 2, HAAT family, amino acid/amide ABC transporter ATP-binding protein 1, HAAT family {ECO:0000313|EMBL:AFM41645.1}; Flags: Precursor;; TaxID=646529 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus acidiphilus (strain DSM 22704 / JCM 16185 / SJ4).;"
SCN18_25_1_16_R5_B_scaffold_1062_6
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5077..5865
DNA (789bp) protein (263aa)
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family (TC 3.A.1.4.-) n=3 Tax=Megamonas RepID=D4KHY7_9FIRM
amino acid/amide ABC transporter ATP-binding protein 2, HAAT family (TC 3.A.1.4.-)
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
SCN18_25_1_16_R5_B_scaffold_1062_7
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5862..7067
DNA (1206bp) protein (402aa)
Twin-arginine translocation pathway signal n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IYC3_RHOP2
twin-arginine translocation pathway signal
Twin-arginine translocation pathway signal {ECO:0000313|EMBL:ABD06787.1}; Flags: Precursor;; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCN18_25_1_16_R5_B_scaffold_1062_8
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7161..8096
DNA (936bp) protein (312aa)
Transcriptional regulator n=1 Tax=Magnetospirillum sp. SO-1 RepID=M3A5L9_9PROT
Transcriptional regulator {ECO:0000313|EMBL:KJS45744.1}; TaxID=1629718 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae.;" source="Rhodospirillaceae bacterium BRH_c57.;"
transcriptional regulator
SCN18_25_1_16_R5_B_scaffold_1062_9
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8221..8595
DNA (375bp) protein (125aa)
Transposase, IS4 family protein n=2 Tax=Roseibium sp. TrichSKD4 RepID=E2CCG7_9RHOB
Transposase, IS4 family protein {ECO:0000313|EMBL:EFO33599.1}; TaxID=744980 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseibium.;" source="Roseibium sp. TrichSKD4.;"
transposase
SCN18_25_1_16_R5_B_scaffold_1062_10
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8672..8977
DNA (306bp) protein (102aa)
Transposase n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DD74_BRAJP
Putative transposase {ECO:0000313|EMBL:BAR58477.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
transposase
SCN18_25_1_16_R5_B_scaffold_1062_11
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9042..9140
DNA (99bp) protein (33aa)
transposase n=1 Tax=Xanthobacteraceae RepID=UPI000375B6DC
transposase IS3/IS911 family protein
Transposase IS3/IS911 family protein {ECO:0000313|EMBL:ABS65819.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCN18_25_1_16_R5_B_scaffold_1062_12
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9180..10010)
DNA (831bp) protein (277aa)
integrase n=1 Tax=Rhizobium leguminosarum RepID=UPI000375D580
Putative transposase protein {ECO:0000313|EMBL:EAV40690.1}; TaxID=384765 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia aggregata (strain ATCC 25650 / DSM 13394 / JCM 20685 / NBRC; 16684 / NCIMB 2208 / IAM 12614) (Stappia aggregata).;"
integrase
SCN18_25_1_16_R5_B_scaffold_1062_13
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10007..10318)
DNA (312bp) protein (104aa)
Mobile element protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MT31_9SPHN
Mobile element protein {ECO:0000313|EMBL:CCW18553.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
transposase
Displaying 13 items

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