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SCN18_25_8_15_R2_B_scaffold_892

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Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_892_1
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..367)
DNA (366bp) protein (122aa)
Guanine deaminase {ECO:0000313|EMBL:CDP50653.1}; EC=3.5.4.3 {ECO:0000313|EMBL:CDP50653.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
Chlorohydrolase n=1 Tax=Asticcacaulis sp. AC402 RepID=V4NLY7_9CAUL
guaD; guanine deaminase
SCN18_25_8_15_R2_B_scaffold_892_2
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(364..2223)
DNA (1860bp) protein (620aa)
Adenine deaminase {ECO:0000256|SAAS:SAAS00006067}; EC=3.5.4.2 {ECO:0000256|SAAS:SAAS00006067};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
Adenine deaminase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YY51_9RHIZ
ade; adenine deaminase
SCN18_25_8_15_R2_B_scaffold_892_3
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2766..3437)
DNA (672bp) protein (224aa)
XRE family transcriptional regulator n=1 Tax=Rhizobium leguminosarum RepID=UPI0003739622
Two-component response regulator {ECO:0000313|EMBL:CDP51855.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
mprA; response regulator protein MprA
SCN18_25_8_15_R2_B_scaffold_892_4
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3434..4864)
DNA (1431bp) protein (477aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
sensor histidine kinase protein (EC:2.7.13.3)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00036693AD
SCN18_25_8_15_R2_B_scaffold_892_5
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5061..6077
DNA (1017bp) protein (339aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQM5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:CDP52971.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_892_6
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6184..6795)
DNA (612bp) protein (204aa)
phosphoglycerate mutase n=1 Tax=Rhizobium mongolense RepID=UPI0003B79510
Uncharacterized protein {ECO:0000313|EMBL:KKB13611.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
phosphoglycerate mutase
SCN18_25_8_15_R2_B_scaffold_892_7
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6796..7473)
DNA (678bp) protein (226aa)
NADPH-dependent FMN reductase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7T9_PELHB
NADPH:quinone oxidoreductase {ECO:0000313|EMBL:CDP52227.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
NADPH-dependent FMN reductase
SCN18_25_8_15_R2_B_scaffold_892_8
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7535..8662)
DNA (1128bp) protein (376aa)
Chaperone protein DnaJ n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7U0_PELHB
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
molecular chaperone DnaJ
SCN18_25_8_15_R2_B_scaffold_892_9
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8827..9951)
DNA (1125bp) protein (375aa)
Alpha/beta hydrolase fold-3 domain protein n=1 Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) RepID=D9QMA0_BRESC
Uncharacterized protein {ECO:0000313|EMBL:KFL27827.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
alpha/beta hydrolase
SCN18_25_8_15_R2_B_scaffold_892_10
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10126..12033)
DNA (1908bp) protein (636aa)
Chaperone protein DnaK n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7U1_PELHB
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
molecular chaperone DnaK
SCN18_25_8_15_R2_B_scaffold_892_11
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12282..12617)
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI0003629F1C
Uncharacterized protein {ECO:0000313|EMBL:CDP52209.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_892_12
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12810..13172
DNA (363bp) protein (121aa)
SCN18_25_8_15_R2_B_scaffold_892_13
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13188..13820
DNA (633bp) protein (211aa)
nicotinamidase (EC:3.5.1.19)
Nicotinamidase-like amidase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YY86_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB07841.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
SCN18_25_8_15_R2_B_scaffold_892_14
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13828..14169
DNA (342bp) protein (114aa)
SCN18_25_8_15_R2_B_scaffold_892_15
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14326..14940)
DNA (615bp) protein (205aa)
Protein GrpE n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7U2_PELHB
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
heat shock protein GrpE
SCN18_25_8_15_R2_B_scaffold_892_16
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15031..16125)
DNA (1095bp) protein (365aa)
Heat-inducible transcription repressor hrcA n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7U3_PELHB
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081, ECO:0000256|SAAS:SAAS00101987}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
heat-inducible transcription repressor HrcA
SCN18_25_8_15_R2_B_scaffold_892_17
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16226..16939
DNA (714bp) protein (238aa)
Ribonuclease PH {ECO:0000256|HAMAP-Rule:MF_00564}; Short=RNase PH {ECO:0000256|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000256|HAMAP-Rule:MF_00564};; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00564}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
Ribonuclease PH n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7U4_PELHB
ribonuclease PH
SCN18_25_8_15_R2_B_scaffold_892_18
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


16939..17601
DNA (663bp) protein (221aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
Non-canonical purine NTP pyrophosphatase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7U5_PELHB
nucleoside 5-triphosphatase RdgB
SCN18_25_8_15_R2_B_scaffold_892_19
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17591..18781
DNA (1191bp) protein (397aa)
Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8F3_PELHB
Radical SAM family enzyme, similar to coproporphyr inogen III oxidase, oxygen-independent, clustered with nucle oside-triphosphatase RdgB {ECO:0000313|EMBL:CDP52201.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
radical SAM family protein
SCN18_25_8_15_R2_B_scaffold_892_20
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19262..20320
DNA (1059bp) protein (353aa)
UPI0003CE454B related cluster n=1 Tax=unknown RepID=UPI0003CE454B
LacI family transcriptional regulator {ECO:0000313|EMBL:KKB13245.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
LacI family transcriptional regulator
SCN18_25_8_15_R2_B_scaffold_892_21
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20357..20629
DNA (273bp) protein (91aa)
SCN18_25_8_15_R2_B_scaffold_892_22
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20668..22404)
DNA (1737bp) protein (579aa)
diguanylate cyclase n=1 Tax=Methylobacterium sp. 88A RepID=UPI00037FFCA0
Diguanylate cyclase {ECO:0000313|EMBL:EHP94942.1}; TaxID=882800 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens DSM 13060.;"
diguanylate cyclase
SCN18_25_8_15_R2_B_scaffold_892_23
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22650..23024
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3I1I4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EPE99071.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
putative protein R00369
SCN18_25_8_15_R2_B_scaffold_892_24
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23024..24259
DNA (1236bp) protein (412aa)
ECF subfamily RNA polymerase sigma-70 factor n=1 Tax=Pseudomonas stutzeri DSM 10701 RepID=I6Z0B6_PSEST
ECF subfamily RNA polymerase sigma-70 factor
Uncharacterized protein {ECO:0000313|EMBL:AFN76302.1}; TaxID=1123519 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri DSM 10701.;"
SCN18_25_8_15_R2_B_scaffold_892_25
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24297..25250)
DNA (954bp) protein (318aa)
Glyoxylate reductase / glyoxylate reductase / hydroxypyruvate reductase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9A4_PELHB
2-hydroxyacid dehydrogenase {ECO:0000313|EMBL:KKB76349.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
glyoxylate reductase / glyoxylate reductase / hydroxypyruvate reductase
SCN18_25_8_15_R2_B_scaffold_892_26
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25385..25972
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9A5_PELHB
Uncharacterized protein {ECO:0000313|EMBL:CDP52111.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_892_27
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25988..27085)
DNA (1098bp) protein (366aa)
RecD-like DNA helicase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8Q6_PELHB
ATP-binding protein {ECO:0000313|EMBL:KKB84354.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
recombinase D
SCN18_25_8_15_R2_B_scaffold_892_28
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27085..27771)
DNA (687bp) protein (229aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002F9B36D
Uncharacterized protein {ECO:0000313|EMBL:KKB11078.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
putative fumarylacetoacetate hydrolase
SCN18_25_8_15_R2_B_scaffold_892_29
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28024..28212
DNA (189bp) protein (63aa)
SCN18_25_8_15_R2_B_scaffold_892_30
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28209..29600
DNA (1392bp) protein (464aa)
Glutamyl-tRNA(Gln) amidotransferase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HXL5_AZOC5
amidase
Glutamyl-tRNA(Gln) amidotransferase {ECO:0000313|EMBL:BAF87513.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
Displaying items 1-30 of 44 in total

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