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SCN18_25_8_15_R2_B_scaffold_1107

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_1107_1
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..81)
DNA (81bp) protein (27aa)
SCN18_25_8_15_R2_B_scaffold_1107_2
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(147..1385)
DNA (1239bp) protein (413aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036FF377
Uncharacterized protein {ECO:0000313|EMBL:KFL25760.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
extracellular solute-binding protein
SCN18_25_8_15_R2_B_scaffold_1107_3
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1429..2517)
DNA (1089bp) protein (363aa)
Maltose/maltodextrin transport ATP-binding protein MalK {ECO:0000313|EMBL:CDP51153.1}; EC=3.6.3.19 {ECO:0000313|EMBL:CDP51153.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000380FF52
sugar ABC transporter ATPase
SCN18_25_8_15_R2_B_scaffold_1107_4
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2530..3753)
DNA (1224bp) protein (408aa)
putative Glucarate dehydratase (EC:4.2.1.40)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035FCDB7
Mandelate racemase {ECO:0000313|EMBL:KFL25762.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
SCN18_25_8_15_R2_B_scaffold_1107_5
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3768..4568)
DNA (801bp) protein (267aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CHI2_9RHOB
Short-chain dehydrogenase {ECO:0000313|EMBL:KFL25763.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
short-chain dehydrogenase/reductase SDR
SCN18_25_8_15_R2_B_scaffold_1107_6
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4701..5789
DNA (1089bp) protein (363aa)
3-carboxymuconate cyclase-like n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CHI3_9RHOB
Putative hemagglutinin-related protein {ECO:0000313|EMBL:CDP51150.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
3-carboxymuconate cyclase
SCN18_25_8_15_R2_B_scaffold_1107_7
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5828..8443
DNA (2616bp) protein (872aa)
Glycoside hydrolase family 38 n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CHV9_THET1
glycoside hydrolase family protein
Glycoside hydrolase family 38 {ECO:0000313|EMBL:ACZ43330.1}; TaxID=525904 species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
SCN18_25_8_15_R2_B_scaffold_1107_8
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8466..11093
DNA (2628bp) protein (876aa)
hypothetical protein id=17009092 bin=RBG_16_Aminicenantes_63_14 species=Bacteroides faecis CAG:32 genus=Bacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=RBG_16_Aminicenantes_63_14 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein
Tax=RBG_19FT_COMBO_Aminicenantes_65_30_curated
SCN18_25_8_15_R2_B_scaffold_1107_9
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11213..12235)
DNA (1023bp) protein (341aa)
Uncharacterized protein n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WNV2_VEREI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM59309.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SCN18_25_8_15_R2_B_scaffold_1107_10
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12315..14252)
DNA (1938bp) protein (646aa)
Acetoacetyl-CoA synthetase {ECO:0000313|EMBL:AHK03929.1}; EC=6.2.1.16 {ECO:0000313|EMBL:AHK03929.1};; TaxID=1435057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens LBA4213 (Ach5).;"
acetoacetyl-CoA synthetase n=1 Tax=Agrobacterium sp. 10MFCol1.1 RepID=UPI000378369D
acsA; acetoacetyl-CoA synthetase
SCN18_25_8_15_R2_B_scaffold_1107_11
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14245..15423)
DNA (1179bp) protein (393aa)
3-ketoacyl-CoA thiolase / acetyl-CoA acetyltransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7M2_PELHB
3-ketoacyl-CoA thiolase
3-ketoacyl-CoA thiolase / acetyl-CoA acetyltransferase {ECO:0000313|EMBL:AEQ52326.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCN18_25_8_15_R2_B_scaffold_1107_12
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15541..16413)
DNA (873bp) protein (291aa)
bdhA; D-beta-hydroxybutyrate dehydrogenase (EC:1.1.1.30)
D-beta-hydroxybutyrate dehydrogenase n=2 Tax=Rhizobium RepID=U4QBH8_9RHIZ
3-hydroxybutyrate dehydrogenase {ECO:0000313|EMBL:KKB86059.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
SCN18_25_8_15_R2_B_scaffold_1107_13
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16462..17895)
DNA (1434bp) protein (478aa)
PAS modulated sigma-54 specific transcriptional regulator, Fis family n=1 Tax=Azoarcus sp. KH32C RepID=H0PUY0_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:KKB86122.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
PAS modulated sigma-54 specific transcriptional regulator, Fis family
SCN18_25_8_15_R2_B_scaffold_1107_14
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18124..21045
DNA (2922bp) protein (974aa)
Tmonovalent cation:proton antiporter n=1 Tax=Microvirga sp. WSM3557 RepID=I4YKY5_9RHIZ
Na(+) H(+) antiporter subunit A {ECO:0000313|EMBL:KFC70646.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
monovalent cation/proton antiporter
SCN18_25_8_15_R2_B_scaffold_1107_15
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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21045..21377
DNA (333bp) protein (111aa)
cation:proton antiporter n=1 Tax=Hoeflea sp. 108 RepID=UPI0003778D33
Monovalent cation/H+ antiporter subunit C {ECO:0000313|EMBL:KKB86496.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
putative monovalent cation/H+ antiporter subunit C
SCN18_25_8_15_R2_B_scaffold_1107_16
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21377..22972
DNA (1596bp) protein (532aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000364D478
Monovalent cation/H+ antiporter subunit D {ECO:0000313|EMBL:KKB86497.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
phaD; K+/H+ antiporter subunit D
SCN18_25_8_15_R2_B_scaffold_1107_17
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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22969..23448
DNA (480bp) protein (160aa)
Putative monovalent cation/H+ antiporter subunit E n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTJ3_9GAMM
Monovalent cation/H+ antiporter subunit E {ECO:0000313|EMBL:KKB86498.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
multisubunit Na+/H+ antiporter, MnhE subunit
SCN18_25_8_15_R2_B_scaffold_1107_18
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23445..23726
DNA (282bp) protein (94aa)
Potassium efflux system protein n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BLD0_9GAMM
Potassium efflux system protein {ECO:0000313|EMBL:EAR23118.1}; TaxID=314278 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Nitrococcus.;" source="Nitrococcus mobilis Nb-231.;"
putative monovalent cation/H+ antiporter subunit F
SCN18_25_8_15_R2_B_scaffold_1107_19
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23723..24094
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P439_AZOS1
Uncharacterized protein {ECO:0000313|EMBL:KFL28280.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1107_20
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24174..25043
DNA (870bp) protein (290aa)
UspA n=1 Tax=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) RepID=Q1GXW4_METFK
hypothetical protein
UspA {ECO:0000313|EMBL:ABE50923.1}; TaxID=265072 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylobacillus.;" source="Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875).;"
SCN18_25_8_15_R2_B_scaffold_1107_21
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25080..25706)
DNA (627bp) protein (209aa)
Crp/FNR family transcriptional regulator n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HC01_9RHIZ
hypothetical protein
Crp/FNR family transcriptional regulator {ECO:0000313|EMBL:EPE96232.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
SCN18_25_8_15_R2_B_scaffold_1107_22
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25952..28186
DNA (2235bp) protein (745aa)
Putative Diguanylate cyclase {ECO:0000313|EMBL:CCM76752.1}; EC=2.7.7.65 {ECO:0000313|EMBL:CCM76752.1};; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
Putative Diguanylate cyclase n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PZ64_9RHIZ
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1107_23
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28362..29309
DNA (948bp) protein (316aa)
Uncharacterized protein n=1 Tax=Halomonas anticariensis FP35 = DSM 16096 RepID=S2KYN2_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EPC00494.1}; TaxID=1121939 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas anticariensis FP35 = DSM 16096.;"
chemotaxis sensory transducer
Displaying 23 items

View Taxonomy