ggKbase home page

SCN18_25_8_15_R2_B_scaffold_1896

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_1896_1
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2..181)
DNA (180bp) protein (60aa)
50S ribosomal protein L35 n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=RL35_PHEZH
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
rpmI; 50S ribosomal protein L35
SCN18_25_8_15_R2_B_scaffold_1896_2
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(312..761)
DNA (450bp) protein (150aa)
Transcriptional regulator, MarR family protein n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IY52_RHOCS
transcriptional regulator, MarR family protein
Transcriptional regulator, MarR family protein {ECO:0000313|EMBL:ACJ01226.1}; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
SCN18_25_8_15_R2_B_scaffold_1896_3
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(892..1674)
DNA (783bp) protein (261aa)
UPI0003CFF32B related cluster n=1 Tax=unknown RepID=UPI0003CFF32B
Uncharacterized protein {ECO:0000313|EMBL:KHK89202.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1896_4
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1780..2667)
DNA (888bp) protein (296aa)
LysR family transcriptional regulator n=1 Tax=Rhizobium sp. Pop5 RepID=K0VWF4_9RHIZ
LysR family transcriptional regulator {ECO:0000313|EMBL:EJZ21795.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
LysR family transcriptional regulator
SCN18_25_8_15_R2_B_scaffold_1896_5
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2772..3392
DNA (621bp) protein (207aa)
oxidoreductase n=1 Tax=Rhizobium leguminosarum RepID=UPI00037F7F76
Oxidoreductase {ECO:0000313|EMBL:KFL32382.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
coenzyme F420-dependent NADP oxidoreductase
SCN18_25_8_15_R2_B_scaffold_1896_6
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3494..3853
DNA (360bp) protein (120aa)
Mll8379 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q983D3_RHILO
Putative small membrane protein {ECO:0000313|EMBL:ETA72568.1}; TaxID=935547 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium loti R7A.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1896_7
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3911..4435)
DNA (525bp) protein (175aa)
Translation initiation factor IF-3 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBP6_PELHB
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
translation initiation factor 3
SCN18_25_8_15_R2_B_scaffold_1896_8
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4629..5429
DNA (801bp) protein (267aa)
2-hydroxymuconic semialdehyde hydrolase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBP7_PELHB
2-hydroxymuconic semialdehyde hydrolase
2-hydroxymuconic semialdehyde hydrolase {ECO:0000313|EMBL:AEQ53688.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCN18_25_8_15_R2_B_scaffold_1896_9
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5434..6090)
DNA (657bp) protein (219aa)
N-acetyltransferase GCN5 n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BYK4_9RHIZ
N-acetyltransferase GCN5
Tax=RBG_16_Betaproteobacteria_66_20_curated
SCN18_25_8_15_R2_B_scaffold_1896_10
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6087..6959)
DNA (873bp) protein (291aa)
Nucleoside-diphosphate-sugar epimerase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R995_PELHB
Epimerase {ECO:0000313|EMBL:KKC37896.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
nucleoside-diphosphate-sugar epimerase
SCN18_25_8_15_R2_B_scaffold_1896_11
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6972..8171)
DNA (1200bp) protein (400aa)
Epoxyqueuosine reductase {ECO:0000256|HAMAP-Rule:MF_00916}; EC=1.17.99.6 {ECO:0000256|HAMAP-Rule:MF_00916};; Queuosine biosynthesis protein QueG {ECO:0000256|HAMAP-Rule:MF_00916}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
Iron-sulfur cluster-binding protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R994_PELHB
(Fe-S)-binding protein
SCN18_25_8_15_R2_B_scaffold_1896_12
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8290..8967)
DNA (678bp) protein (226aa)
Glutathione S-transferase family protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R993_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB76403.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
glutathione S-transferase family protein
SCN18_25_8_15_R2_B_scaffold_1896_13
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9054..9866
DNA (813bp) protein (271aa)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
bacA1; Undecaprenyl-diphosphatase (EC:3.6.1.27)
Undecaprenyl-diphosphatase n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7U483_RHIRD
SCN18_25_8_15_R2_B_scaffold_1896_14
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9776..10063)
DNA (288bp) protein (96aa)
SCN18_25_8_15_R2_B_scaffold_1896_15
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10065..10913
DNA (849bp) protein (283aa)
Arylamine N-acetyltransferase {ECO:0000313|EMBL:KFC64312.1}; EC=2.3.1.5 {ECO:0000313|EMBL:KFC64312.1};; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
Arylamine N-acetyltransferase (EC:2.3.1.5)
N-hydroxyarylamine O-acetyltransferase n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GJS2_9BACT
SCN18_25_8_15_R2_B_scaffold_1896_16
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10913..11512
DNA (600bp) protein (200aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003756B32
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACP25551.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
SCN18_25_8_15_R2_B_scaffold_1896_17
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11509..12027
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Streptomyces sp. HGB0020 RepID=S2Z908_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:CDP53430.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
Protein containing DUF1697
SCN18_25_8_15_R2_B_scaffold_1896_18
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12024..12920
DNA (897bp) protein (299aa)
PfkB domain-containing protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2N7F5_9RHIZ
Ribokinase {ECO:0000313|EMBL:KKB76397.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
ribokinase
SCN18_25_8_15_R2_B_scaffold_1896_19
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13071..13937)
DNA (867bp) protein (289aa)
Glycosyl transferase, group 2 family protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9B4_PELHB
Probable glycosyl transferase {ECO:0000313|EMBL:CDP53433.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
glycosyl transferase family protein
SCN18_25_8_15_R2_B_scaffold_1896_20
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14065..14484
DNA (420bp) protein (140aa)
Small heat shock protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9B3_PELHB
Heat-shock protein Hsp20 {ECO:0000313|EMBL:KFL26306.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
small heat shock protein
SCN18_25_8_15_R2_B_scaffold_1896_21
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14500..14772
DNA (273bp) protein (91aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB11508.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
SCN18_25_8_15_R2_B_scaffold_1896_22
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14929..15396)
DNA (468bp) protein (156aa)
PTS system nitrogen-specific IIA component, PtsN n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9A9_PELHB
Nitrogen regulatory protein {ECO:0000313|EMBL:KFL26308.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
PTS system nitrogen-specific IIA component, PtsN
SCN18_25_8_15_R2_B_scaffold_1896_23
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15445..16008)
DNA (564bp) protein (188aa)
Ribosomal subunit interface protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9A8_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB76121.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
ribosomal subunit interface protein
SCN18_25_8_15_R2_B_scaffold_1896_24
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16215..16904)
DNA (690bp) protein (230aa)
RNA polymerase sigma-54 factor n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8L4_PELHB
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
RNA polymerase sigma-54 factor RpoN
Displaying 24 items

View Taxonomy