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SCN18_25_8_15_R2_B_scaffold_2117

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_2117_1
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..309
DNA (309bp) protein (103aa)
Extracellular ligand-binding receptor n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8F4_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB07848.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
ABC transporter substrate-binding protein
SCN18_25_8_15_R2_B_scaffold_2117_2
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(326..853)
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBT6_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB10726.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_2117_3
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(960..1568)
DNA (609bp) protein (203aa)
Putative hydrolases of HD superfamily n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBT7_PELHB
Hydrolase {ECO:0000313|EMBL:KKB82645.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
putative hydrolases of HD superfamily
SCN18_25_8_15_R2_B_scaffold_2117_4
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1781..2599)
DNA (819bp) protein (273aa)
Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBT8_PELHB
Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress {ECO:0000313|EMBL:KFC69561.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress
SCN18_25_8_15_R2_B_scaffold_2117_5
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2652..3974
DNA (1323bp) protein (441aa)
Dihydroorotase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBT9_PELHB
Dihydroorotase {ECO:0000256|SAAS:SAAS00252556}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
dihydroorotase
SCN18_25_8_15_R2_B_scaffold_2117_6
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4092..4376)
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBV2_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL27128.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_2117_7
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4479..4850)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBV3_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB84474.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_2117_8
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4882..5289)
DNA (408bp) protein (136aa)
UPI0003CF947A related cluster n=1 Tax=unknown RepID=UPI0003CF947A
Uncharacterized protein {ECO:0000313|EMBL:KKC32947.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
MutT/nudix family protein
SCN18_25_8_15_R2_B_scaffold_2117_9
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5358..6110
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBV5_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB08853.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_2117_10
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6107..6664)
DNA (558bp) protein (186aa)
Coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductase-like protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBV9_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB82651.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductase-like protein
SCN18_25_8_15_R2_B_scaffold_2117_11
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6709..8118)
DNA (1410bp) protein (470aa)
D-2-hydroxyglutarate dehydrogenase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBW0_PELHB
2-hydroxyacid dehydrogenase {ECO:0000313|EMBL:KFL27126.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
D-2-hydroxyacid dehydrogenase
SCN18_25_8_15_R2_B_scaffold_2117_12
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8225..9028
DNA (804bp) protein (268aa)
Enoyl-[acyl-carrier-protein] reductase [NADH] {ECO:0000256|PIRNR:PIRNR000094}; EC=1.3.1.9 {ECO:0000256|PIRNR:PIRNR000094};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
Enoyl-[acyl-carrier-protein] reductase [NADH] n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBW1_PELHB
enoyl-ACP reductase
SCN18_25_8_15_R2_B_scaffold_2117_13
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9080..9709
DNA (630bp) protein (210aa)
Phosphoglycerate mutase family (Rhiz) n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBW2_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKC32973.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
phosphoglycerate mutase family (Rhiz)
SCN18_25_8_15_R2_B_scaffold_2117_14
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9756..10028
DNA (273bp) protein (91aa)
Prevent-host-death family protein n=3 Tax=Azotobacter vinelandii RepID=C1DGX0_AZOVD
Prevent-host-death family protein
Prevent-host-death family protein {ECO:0000313|EMBL:ACO80616.1}; TaxID=322710 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Azotobacter.;" source="Azotobacter vinelandii (strain DJ / ATCC BAA-1303).;"
SCN18_25_8_15_R2_B_scaffold_2117_15
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10006..10278
DNA (273bp) protein (91aa)
hypothetical protein n=1 Tax=Citrobacter freundii RepID=UPI000306128D
RelE toxin
RelE toxin {ECO:0000313|EMBL:AHY11625.1}; TaxID=1333848 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii CFNIH1.;"
SCN18_25_8_15_R2_B_scaffold_2117_16
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10340..11446
DNA (1107bp) protein (369aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
Chorismate synthase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBW4_PELHB
chorismate synthase
SCN18_25_8_15_R2_B_scaffold_2117_17
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11440..12180)
DNA (741bp) protein (247aa)
RNA binding methyltransferase FtsJ like protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBW8_PELHB
RNA binding methyltransferase FtsJ like {ECO:0000313|EMBL:CDP50092.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
RNA binding methyltransferase FtsJ like protein
SCN18_25_8_15_R2_B_scaffold_2117_18
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12177..12782)
DNA (606bp) protein (202aa)
Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBW9_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB76773.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
cytochrome oxidase biogenesis protein Sco1/SenC/PrrC copper metallochaperone
SCN18_25_8_15_R2_B_scaffold_2117_19
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12875..13123)
DNA (249bp) protein (83aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
Exodeoxyribonuclease 7 small subunit n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBX0_PELHB
exodeoxyribonuclease VII small subunit
SCN18_25_8_15_R2_B_scaffold_2117_20
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13153..14082)
DNA (930bp) protein (310aa)
Acetylspermidine deacetylase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBX1_PELHB
Acetoin utilization protein {ECO:0000313|EMBL:KFL27120.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
acetylspermidine deacetylase
SCN18_25_8_15_R2_B_scaffold_2117_21
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14175..15119
DNA (945bp) protein (315aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synthase {ECO:0000256|PIRNR:PIRNR004930}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
YrdC/Sua5 family protein, required for threonylcarbamoyladenosine (T(6)A) formation in tRNA n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBX2_PELHB
YrdC/Sua5 family protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA
SCN18_25_8_15_R2_B_scaffold_2117_22
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15151..16512
DNA (1362bp) protein (454aa)
metal-dependent phosphohydrolase n=1 Tax=Hoeflea sp. 108 RepID=UPI00037AD601
response regulator
Response regulator {ECO:0000313|EMBL:AEQ52157.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCN18_25_8_15_R2_B_scaffold_2117_23
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16509..17474)
DNA (966bp) protein (322aa)
DnaJ-class molecular chaperone CbpA n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBX5_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB76650.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
DnaJ-class molecular chaperone CbpA
SCN18_25_8_15_R2_B_scaffold_2117_24
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17581..18216
DNA (636bp) protein (212aa)
Pyridoxine/pyridoxamine 5'-phosphate oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; EC=1.4.3.5 {ECO:0000256|HAMAP-Rule:MF_01629};; PNP/PMP oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; Pyridoxal 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_01629}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
Pyridoxine/pyridoxamine 5'-phosphate oxidase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBX6_PELHB
pyridoxamine 5'-phosphate oxidase
SCN18_25_8_15_R2_B_scaffold_2117_25
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18365..19216
DNA (852bp) protein (284aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBX9_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB80703.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_2117_26
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19224..20147)
DNA (924bp) protein (308aa)
Metallo-beta-lactamase family protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBY0_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL27115.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
metallo-beta-lactamase family protein
SCN18_25_8_15_R2_B_scaffold_2117_27
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20215..20850
DNA (636bp) protein (212aa)
Substrate-specific component BioY of biotin ECF transporter n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBY1_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB10974.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
substrate-specific component BioY of biotin ECF transporter
Displaying 27 items

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