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SCN18_25_8_15_R2_B_scaffold_2330

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_2330_1
SCNPILOT_EXPT_1000_BF_Devosia_65_23, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..3004
DNA (3003bp) protein (1001aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
DNA-directed RNA polymerase subunit beta' n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC48_PELHB
DNA-directed RNA polymerase subunit beta'
SCN18_25_8_15_R2_B_scaffold_2330_2
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3130..3792
DNA (663bp) protein (221aa)
UPI0003CEF226 related cluster n=1 Tax=unknown RepID=UPI0003CEF226
Methyltransferase {ECO:0000313|EMBL:KFL28631.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
O-methyltransferase family protein
SCN18_25_8_15_R2_B_scaffold_2330_3
Sphingopyxis sp. MC1_SCNPILOT_EXPT_500_BF_STEP10_Sphingopyxis_65_8, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3796..4254)
DNA (459bp) protein (153aa)
Putative uncharacterized protein n=1 Tax=Marichromatium purpuratum 984 RepID=F9TXC7_MARPU
Uncharacterized protein {ECO:0000313|EMBL:KFL28630.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_2330_4
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4761..5132
DNA (372bp) protein (124aa)
30S ribosomal protein S12 n=1 Tax=Maricaulis maris (strain MCS10) RepID=RS12_MARMM
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
rpsL; 30S ribosomal protein S12
SCN18_25_8_15_R2_B_scaffold_2330_5
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5145..5615
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC43_PELHB
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
30S ribosomal protein S7
SCN18_25_8_15_R2_B_scaffold_2330_6
SCNPILOT_EXPT_1000_BF_Devosia_65_23, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5633..7723
DNA (2091bp) protein (697aa)
Elongation factor G n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC42_PELHB
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
translation elongation factor G
SCN18_25_8_15_R2_B_scaffold_2330_7
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7832..9022
DNA (1191bp) protein (397aa)
Elongation factor Tu n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC41_PELHB
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
translation elongation factor Tu
SCN18_25_8_15_R2_B_scaffold_2330_8
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9090..9398
DNA (309bp) protein (103aa)
30S ribosomal protein S10 n=2 Tax=Oligotropha carboxidovorans RepID=RS10_OLICO
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
rpsJ; 30S ribosomal protein S10
SCN18_25_8_15_R2_B_scaffold_2330_9
SCNPILOT_EXPT_1000_BF_Devosia_65_23, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9481..10185
DNA (705bp) protein (235aa)
50S ribosomal protein L3 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC39_PELHB
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
50S ribosomal protein L3
SCN18_25_8_15_R2_B_scaffold_2330_10
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10185..10805
DNA (621bp) protein (207aa)
50S ribosomal protein L4 n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J584_HYPSM
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
rplD; 50S ribosomal protein L4
SCN18_25_8_15_R2_B_scaffold_2330_11
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


10802..11095
DNA (294bp) protein (98aa)
50S ribosomal protein L23 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC37_PELHB
50S ribosomal protein L23
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCN18_25_8_15_R2_B_scaffold_2330_12
SCNPILOT_EXPT_1000_BF_Devosia_65_23, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11111..11950
DNA (840bp) protein (280aa)
50S ribosomal protein L2 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC36_PELHB
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
50S ribosomal protein L2
SCN18_25_8_15_R2_B_scaffold_2330_13
SCNPILOT_EXPT_1000_BF_Devosia_65_23, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11954..12232
DNA (279bp) protein (93aa)
30S ribosomal protein S19 n=1 Tax=Methylocystis parvus RepID=UPI0001F883CC
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
30S ribosomal protein S19
SCN18_25_8_15_R2_B_scaffold_2330_14
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12234..12614
DNA (381bp) protein (127aa)
50S ribosomal protein L22 n=1 Tax=Rhizobium sp. RepID=L0NFZ9_RHISP
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
50S ribosomal protein L22
SCN18_25_8_15_R2_B_scaffold_2330_15
SCNPILOT_EXPT_1000_BF_Devosia_65_23, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12614..13375
DNA (762bp) protein (254aa)
30S ribosomal protein S3 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC33_PELHB
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
30S ribosomal protein S3
SCN18_25_8_15_R2_B_scaffold_2330_16
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13392..13559
DNA (168bp) protein (56aa)
50S ribosomal protein L16 n=1 Tax=alpha proteobacterium JLT2015 RepID=M2U327_9PROT
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=1234595 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium JLT2015.;"
50S ribosomal protein L16
Displaying 16 items

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