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SCN18_25_8_15_R2_B_scaffold_1314

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_1314_1
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..606
DNA (606bp) protein (202aa)
rRNA methylase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCU8_PELHB
RNA methyltransferase {ECO:0000313|EMBL:KFL31398.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
rRNA methylase
SCN18_25_8_15_R2_B_scaffold_1314_2
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

603..995
DNA (393bp) protein (131aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL31397.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCN18_25_8_15_R2_B_scaffold_1314_3
unknown

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comp(954..1154)
DNA (201bp) protein (67aa)

This feature has no annotations

SCN18_25_8_15_R2_B_scaffold_1314_4
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1265..1765)
DNA (501bp) protein (167aa)
ATPase AAA n=1 Tax=Rhizobium leguminosarum RepID=UPI0003827476
Uncharacterized protein {ECO:0000313|EMBL:GAK69474.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
DNA topology modulation protein
SCN18_25_8_15_R2_B_scaffold_1314_5
unknown

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comp(2067..2300)
DNA (234bp) protein (78aa)

This feature has no annotations

SCN18_25_8_15_R2_B_scaffold_1314_6
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2759..3163)
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF122 RepID=J2JAW3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDN94448.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1314_7
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3531..4421)
DNA (891bp) protein (297aa)
PHP C-terminal domain protein n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4QUI3_9RHIZ
PHP C-terminal domain protein {ECO:0000313|EMBL:ESR23387.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
phosphotransferase domain-containing protein
SCN18_25_8_15_R2_B_scaffold_1314_8
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4433..5971)
DNA (1539bp) protein (513aa)
ABC transporter related protein n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1AZM7_PARDP
ABC transporter related protein {ECO:0000313|EMBL:ABL68721.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
appF; oligopeptide transport ATP-binding protein AppF
SCN18_25_8_15_R2_B_scaffold_1314_9
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6031..7578)
DNA (1548bp) protein (516aa)
Agrocinopine ABC transporter substrate-binding protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MZB8_9RHIZ
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KKB13475.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
Agrocinopine ABC transporter substrate-binding protein
SCN18_25_8_15_R2_B_scaffold_1314_10
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7666..8574)
DNA (909bp) protein (303aa)
Putative transport system permease abc transporter protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NTH8_9RHOB
ABC transporter permease {ECO:0000313|EMBL:KKC38768.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
ABC transporter permease
SCN18_25_8_15_R2_B_scaffold_1314_11
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8571..9494)
DNA (924bp) protein (308aa)
Hypothetical ABC transporter permease protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IYY8_POLGS
ABC transporter permease {ECO:0000313|EMBL:KKB13474.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
gsiC; ABC transporter permease
SCN18_25_8_15_R2_B_scaffold_1314_12
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9487..10356)
DNA (870bp) protein (290aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D6A0FE
Uncharacterized protein {ECO:0000313|EMBL:KKB79094.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
calcineurin-like phosphoesterase domain-containing protein
SCN18_25_8_15_R2_B_scaffold_1314_13
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10494..11234
DNA (741bp) protein (247aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002FD0C57
Uncharacterized protein {ECO:0000313|EMBL:KKB13472.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
HAD superfamily hydrolase protein
SCN18_25_8_15_R2_B_scaffold_1314_14
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11243..12112
DNA (870bp) protein (290aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D7955D
Transcriptional regulator {ECO:0000313|EMBL:KKB79096.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
RpiR family transcriptional regulator protein
SCN18_25_8_15_R2_B_scaffold_1314_15
SCNPILOT_SOLID2_TRIM150_Rhizobiales_67_9, SCNPILOT_SOLID2_TRIM150_Rhizobiales_67_9, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12439..13482)
DNA (1044bp) protein (348aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00035F715A
Uncharacterized protein {ECO:0000313|EMBL:KKB12148.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
dehydrogenase
SCN18_25_8_15_R2_B_scaffold_1314_16
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13494..14609)
DNA (1116bp) protein (372aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000374B9E9
Uncharacterized protein {ECO:0000313|EMBL:KKB12149.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
oxidoreductase
SCN18_25_8_15_R2_B_scaffold_1314_17
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14623..16008)
DNA (1386bp) protein (462aa)
Uncharacterized protein n=1 Tax=Achromobacter piechaudii HLE RepID=J4PCG4_9BURK
Uncharacterized protein {ECO:0000313|EMBL:KKB12150.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1314_18
Paracoccus sp. 361_CN-SCN_Paracoccus_21x, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16027..16896)
DNA (870bp) protein (290aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Burkholderia graminis C4D1M RepID=B1G3E5_9BURK
Diguanylate cyclase {ECO:0000313|EMBL:KKB12151.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
gsiD2; glutathione transporter permease GsiD 2
SCN18_25_8_15_R2_B_scaffold_1314_19
Castellaniella defragrans_SCNPILOT_SOLID2_TRIM150_Castellaniella_66_80, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16893..17840)
DNA (948bp) protein (316aa)
ABC transporter, permease protein n=1 Tax=Bordetella avium (strain 197N) RepID=Q2L1I3_BORA1
Peptide ABC transporter {ECO:0000313|EMBL:KKB12152.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
ABC transporter permease
SCN18_25_8_15_R2_B_scaffold_1314_20
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17902..19398)
DNA (1497bp) protein (499aa)
ABC-type dipeptide transport system, periplasmic component n=1 Tax=Microvirga sp. WSM3557 RepID=I4YL37_9RHIZ
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KKB12206.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
ABC transporter substrate-binding protein
SCN18_25_8_15_R2_B_scaffold_1314_21
SCNPILOT_CONT_750_P_Burkholderiales_64_62, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19478..20566)
DNA (1089bp) protein (363aa)
Oligopeptide/dipeptide ABC transporter, ATP-binding protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YL38_9RHIZ
Peptide ABC transporter ATPase {ECO:0000313|EMBL:KKB12153.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
peptide ABC transporter ATPase
SCN18_25_8_15_R2_B_scaffold_1314_22
SCNPILOT_CONT_750_P_Burkholderiales_64_62, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20563..21555)
DNA (993bp) protein (331aa)
Oligopeptide/dipeptide ABC transporter, ATP-binding protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YL39_9RHIZ
Peptide ABC transporter ATP-binding protein {ECO:0000313|EMBL:KKB12154.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
dppD; peptide ABC transporter ATP-binding protein
SCN18_25_8_15_R2_B_scaffold_1314_23
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21552..22691)
DNA (1140bp) protein (380aa)
UPI0003CEE9D4 related cluster n=2 Tax=unknown RepID=UPI0003CEE9D4
Uncharacterized protein {ECO:0000313|EMBL:KKB12155.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
oxidoreductase
SCN18_25_8_15_R2_B_scaffold_1314_24
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22818..23561)
DNA (744bp) protein (248aa)
Transcriptional regulatory protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89HF1_BRADU
GntR family transcriptional regulator {ECO:0000313|EMBL:KKB12207.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
transcriptional regulator
SCN18_25_8_15_R2_B_scaffold_1314_25
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23685..24554
DNA (870bp) protein (290aa)
serine--glyoxylate transaminase (EC:2.6.1.45)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NMP5_AFIFE
Serine--glyoxylate aminotransferase {ECO:0000313|EMBL:KKB12156.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
Displaying 25 items

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