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SCN18_25_8_15_R2_B_scaffold_1411

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_1411_1
Enterobacter cloacae_SCNPILOT_CONT_500_P_Enterobacter_55_6.1, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..203)
DNA (201bp) protein (67aa)
UPF0386 protein HMPREF0179_01400 n=1 Tax=Bilophila wadsworthia 3_1_6 RepID=E5Y5D7_BILWA
Uncharacterized protein {ECO:0000313|EMBL:KKB78087.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1411_2
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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500..817
DNA (318bp) protein (106aa)
Isochorismate pyruvate-lyase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBB2_PELHB
Chorismate mutase {ECO:0000313|EMBL:KFL32468.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
isochorismate pyruvate-lyase
SCN18_25_8_15_R2_B_scaffold_1411_3
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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876..1379
DNA (504bp) protein (168aa)
Sortase-like acyltransferase n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HT66_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB83523.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
putative acetyltransferase
SCN18_25_8_15_R2_B_scaffold_1411_4
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1376..1861
DNA (486bp) protein (162aa)
Putative acetyltransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBB1_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB82860.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
putative acetyltransferase
SCN18_25_8_15_R2_B_scaffold_1411_5
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1874..3373
DNA (1500bp) protein (500aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121, ECO:0000256|SAAS:SAAS00247567}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00121};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
glutamyl-tRNA amidotransferase subunit B n=1 Tax=Xanthobacteraceae RepID=UPI000369D1DC
gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B
SCN18_25_8_15_R2_B_scaffold_1411_6
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3382..3570)
DNA (189bp) protein (63aa)
SCN18_25_8_15_R2_B_scaffold_1411_7
CN-SCN_Eukaryote_66x, CN-SCN_Eukaryote_66x, CN-SCN_Eukaryote_66x, CN-SCN_Eukaryote_66x, CN-SCN_Eukaryote_66x, Eukaryote

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comp(3571..3780)
DNA (210bp) protein (70aa)
Putative collagen and fibronectin-binding cell surface-anchored protein FneE n=2 Tax=Streptococcus equi RepID=C0M9K8_STRE4
Uncharacterized protein {ECO:0000313|EMBL:KKB09552.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
collagen and fibronectin-binding cell surface-anchored protein FneE
SCN18_25_8_15_R2_B_scaffold_1411_8
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3829..4719)
DNA (891bp) protein (297aa)
Permease of the drug/metabolite transporter (DMT) superfamily n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBA8_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB78091.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
permease of the drug/metabolite transporter (DMT) superfamily
SCN18_25_8_15_R2_B_scaffold_1411_9
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4886..5506
DNA (621bp) protein (207aa)
UPI0003CFFF07 related cluster n=1 Tax=unknown RepID=UPI0003CFFF07
Uncharacterized protein {ECO:0000313|EMBL:KFL32463.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1411_10
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5538..6116
DNA (579bp) protein (193aa)
Transcriptional regulatory protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TKM5_9BRAD
TetR family transcriptional regulator {ECO:0000313|EMBL:KFL32462.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
TetR family transcriptional regulator
SCN18_25_8_15_R2_B_scaffold_1411_11
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6213..6704
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. AP49 RepID=J2D0H5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KFL32461.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1411_12
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6701..7285)
DNA (585bp) protein (195aa)
Phosphoribosylglycinamide formyltransferase {ECO:0000256|HAMAP-Rule:MF_01930}; EC=2.1.2.2 {ECO:0000256|HAMAP-Rule:MF_01930};; 5'-phosphoribosylglycinamide transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; GAR transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
Phosphoribosylglycinamide formyltransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBA7_PELHB
phosphoribosylglycinamide formyltransferase
SCN18_25_8_15_R2_B_scaffold_1411_13
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7282..8358)
DNA (1077bp) protein (359aa)
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370}; EC=6.3.3.1 {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370};; AIR synthase {ECO:0000256|HAMAP-Rule:MF_00741}; AIRS {ECO:0000256|HAMAP-Rule:MF_00741}; Phosphoribosyl-aminoimidazole synthetase {ECO:0000256|HAMAP-Rule:MF_00741}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
Phosphoribosylformylglycinamidine cyclo-ligase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBA6_PELHB
phosphoribosylformylglycinamidine cyclo-ligase
SCN18_25_8_15_R2_B_scaffold_1411_14
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8595..9686
DNA (1092bp) protein (364aa)
Putative permease often clustered with de novo purine synthesis n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBA5_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL32458.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
putative permease often clustered with de novo purine synthesis
SCN18_25_8_15_R2_B_scaffold_1411_15
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9655..10395
DNA (741bp) protein (247aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBA4_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL32457.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
chromosome replication initiator DnaA
SCN18_25_8_15_R2_B_scaffold_1411_16
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10392..12554
DNA (2163bp) protein (721aa)
Polyphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800}; EC=2.7.4.1 {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800};; ATP-polyphosphate phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00347}; Polyphosphoric acid kinase {ECO:0000256|HAMAP-Rule:MF_00347}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
Polyphosphate kinase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBA3_PELHB
polyphosphate kinase
SCN18_25_8_15_R2_B_scaffold_1411_17
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12557..14092
DNA (1536bp) protein (512aa)
Exopolyphosphatase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBA2_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL32455.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
exopolyphosphatase
SCN18_25_8_15_R2_B_scaffold_1411_18
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14096..15265)
DNA (1170bp) protein (390aa)
Ribonuclease D {ECO:0000256|HAMAP-Rule:MF_01899}; Short=RNase D {ECO:0000256|HAMAP-Rule:MF_01899};; EC=3.1.13.5 {ECO:0000256|HAMAP-Rule:MF_01899};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
Ribonuclease D n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBA1_PELHB
ribonuclease D
SCN18_25_8_15_R2_B_scaffold_1411_19
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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15437..17227
DNA (1791bp) protein (597aa)
Aspartate--tRNA ligase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBA0_PELHB
Aspartyl-tRNA synthetase {ECO:0000313|EMBL:KKB78099.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
aspartyl-tRNA synthetase
SCN18_25_8_15_R2_B_scaffold_1411_20
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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17371..18981
DNA (1611bp) protein (537aa)
EAL domain protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RB99_PELHB
EAL domain protein {ECO:0000313|EMBL:KFC72418.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
diguanylate phosphodiesterase
SCN18_25_8_15_R2_B_scaffold_1411_21
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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19109..21394
DNA (2286bp) protein (762aa)
Malic enzyme {ECO:0000313|EMBL:KFL32451.1}; EC=1.1.1.40 {ECO:0000313|EMBL:KFL32451.1};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
NADP-dependent malic enzyme n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RB98_PELHB
NADP-dependent malic enzyme
SCN18_25_8_15_R2_B_scaffold_1411_22
SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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21391..21681
DNA (291bp) protein (97aa)
Stress responsive A/B Barrel Domain-containing protein n=1 Tax=Rhizobium leguminosarum bv. viciae WSM1455 RepID=J0UZT8_RHILV
Stress responsive alpha-beta barrel domain-containing protein {ECO:0000313|EMBL:KKB78101.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
Stress responsive alpha-beta barrel domain protein
SCN18_25_8_15_R2_B_scaffold_1411_23
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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21741..22712
DNA (972bp) protein (324aa)
Ribose-phosphate pyrophosphokinase n=1 Tax=Streptomyces collinus Tu 365 RepID=S5V6E6_STRCU
Ribose-phosphate pyrophosphokinase {ECO:0000313|EMBL:KKB78102.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
ribose-phosphate pyrophosphokinase
Displaying 23 items

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