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SCN18_25_8_15_R2_B_scaffold_1839

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_1839_1
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..1019
DNA (1017bp) protein (339aa)
Myo-inositol 2-dehydrogenase n=1 Tax=Pseudovibrio sp. JE062 RepID=B6QYS5_9RHOB
Myo-inositol 2-dehydrogenase {ECO:0000313|EMBL:KFL32679.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
Oxidoreductase, N-terminal domain-containing protein
SCN18_25_8_15_R2_B_scaffold_1839_2
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1175..2185
DNA (1011bp) protein (337aa)
Transcriptional regulator n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HUU7_9RHIZ
LacI family transcriptional regulator {ECO:0000313|EMBL:KFL32678.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
LacI family transcriptional regulator
SCN18_25_8_15_R2_B_scaffold_1839_3
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2315..3340)
DNA (1026bp) protein (342aa)
hypothetical protein n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI0003640254
Uncharacterized protein {ECO:0000313|EMBL:KFL32677.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
LacI family transcriptional regulator
SCN18_25_8_15_R2_B_scaffold_1839_4
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3555..6338
DNA (2784bp) protein (928aa)
hypothetical protein n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00036BA7D0
Uncharacterized protein {ECO:0000313|EMBL:KKB75967.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
putative glycosyl hydrolase
SCN18_25_8_15_R2_B_scaffold_1839_5
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6580..7662
DNA (1083bp) protein (361aa)
Alpha-glucoside ABC transporter n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9J850_AGRRK
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KFL32675.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
aglK; alpha-glucoside ABC transporter
SCN18_25_8_15_R2_B_scaffold_1839_6
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7750..9024
DNA (1275bp) protein (425aa)
Carbohydrate ABC transporter substrate-binding protein, CUT1 family n=1 Tax=Rubellimicrobium thermophilum DSM 16684 RepID=S9R267_9RHOB
Sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:KFL32674.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
sugar ABC transporter substrate-binding protein
SCN18_25_8_15_R2_B_scaffold_1839_7
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9189..10070
DNA (882bp) protein (294aa)
Carbohydrate ABC transporter membrane protein 1, CUT1 family n=1 Tax=Rubellimicrobium thermophilum DSM 16684 RepID=S9SCB3_9RHOB
Sugar ABC transporter permease {ECO:0000313|EMBL:KFL32673.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
binding-protein-dependent transport systems inner membrane component
SCN18_25_8_15_R2_B_scaffold_1839_8
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10067..10951
DNA (885bp) protein (295aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003701558
Sugar ABC transporter permease {ECO:0000313|EMBL:KFL32672.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
sugar ABC transporter permease
SCN18_25_8_15_R2_B_scaffold_1839_9
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11133..12278
DNA (1146bp) protein (382aa)
Sodium/proton antiporter ChaA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CM61_9RHIZ
Calcium/proton antiporter {ECO:0000313|EMBL:KKB79685.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
calcium/proton antiporter
SCN18_25_8_15_R2_B_scaffold_1839_10
unknown

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12352..12522
DNA (171bp) protein (57aa)

This feature has no annotations

SCN18_25_8_15_R2_B_scaffold_1839_11
SCNPILOT_EXPT_1000_BF_Devosia_65_23, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12544..13296
DNA (753bp) protein (251aa)
atpB; ATP synthase F0, A subunit (EC:3.6.3.14)
ATP synthase subunit a n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CBJ5_9RHIZ
ATP synthase subunit a {ECO:0000256|HAMAP-Rule:MF_01393, ECO:0000256|RuleBase:RU000483}; ATP synthase F0 sector subunit a {ECO:0000256|HAMAP-Rule:MF_01393}; F-ATPase subunit 6 {ECO:0000256|HAMAP-Rule:MF_01393}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCN18_25_8_15_R2_B_scaffold_1839_12
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13306..14379)
DNA (1074bp) protein (358aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=384765 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia aggregata (strain ATCC 25650 / DSM 13394 / JCM 20685 / NBRC; 16684 / NCIMB 2208 / IAM 12614) (Stappia aggregata).;"
D-alanine--D-alanine ligase n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NSS4_9RHOB
ddl; D-alanyl-alanine synthetase A
SCN18_25_8_15_R2_B_scaffold_1839_13
SCN_Rubrivivax_15x, SCN_Rubrivivax_15x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(14490..15200)
DNA (711bp) protein (237aa)
Crp/FNR family transcriptional regulator n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HC01_9RHIZ
Crp/FNR family transcriptional regulator {ECO:0000313|EMBL:EPE96232.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1839_14
SCNpilot_P_inoc_Thiobacillus_strain2_63_34, SCNpilot_P_inoc_Thiobacillus_strain2_63_34, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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15357..17411
DNA (2055bp) protein (685aa)
Putative Diguanylate cyclase {ECO:0000313|EMBL:CCM76752.1}; EC=2.7.7.65 {ECO:0000313|EMBL:CCM76752.1};; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
Putative Diguanylate cyclase n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PZ64_9RHIZ
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
Displaying 14 items

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