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SCN18_25_8_15_R2_B_scaffold_1846

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_1846_1
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(29..460)
DNA (432bp) protein (144aa)
Organic hydroperoxide resistance protein Ohr n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HRV3_RUBGI
Uncharacterized protein {ECO:0000313|EMBL:KFL31876.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
ohr; organic hydroperoxide resistance protein Ohr
SCN18_25_8_15_R2_B_scaffold_1846_2
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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575..1015
DNA (441bp) protein (147aa)
Organic hydroperoxide resistance transcriptional regulator n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3XC66_RHIFR
MarR family transcriptional regulator {ECO:0000313|EMBL:KFL31875.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
ohrR3; organic hydroperoxide resistance transcriptional regulator
SCN18_25_8_15_R2_B_scaffold_1846_3
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1020..1526)
DNA (507bp) protein (169aa)
GCN5-like N-acetyltransferase n=1 Tax=Paenibacillus mucilaginosus 3016 RepID=H6NN79_9BACL
Acetyltransferase (GNAT) family protein {ECO:0000313|EMBL:CEJ14547.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
N-acetyltransferase GCN5
SCN18_25_8_15_R2_B_scaffold_1846_4
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1538..2524)
DNA (987bp) protein (329aa)
Ribonuclease T2 n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YET4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFL31874.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
ribonuclease T2
SCN18_25_8_15_R2_B_scaffold_1846_5
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2589..4496)
DNA (1908bp) protein (636aa)
2', 3'-cyclic nucleotide 2'-phosphodiesterase {ECO:0000313|EMBL:KFL31873.1}; EC=3.1.3.6 {ECO:0000313|EMBL:KFL31873.1};; EC=3.1.4.16 {ECO:0000313|EMBL:KFL31873.1};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
2',3'-cyclic-nucleotide 2'-phosphodiesterase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGS8_PELHB
2',3'-cyclic-nucleotide 2'-phosphodiesterase
SCN18_25_8_15_R2_B_scaffold_1846_6
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4901..5821
DNA (921bp) protein (307aa)
Zinc protease protein n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6XRG9_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:KFL31872.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
zinc metallopeptidase
SCN18_25_8_15_R2_B_scaffold_1846_7
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5891..7426
DNA (1536bp) protein (512aa)
Glycosyltransferase sugar-binding region containing DXD motif n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YHQ3_9RHIZ
Glycosyltransferase sugar-binding region containing DXD motif {ECO:0000313|EMBL:EHH07707.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
glycosyltransferase sugar-binding region containing DXD motif
SCN18_25_8_15_R2_B_scaffold_1846_8
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7509..8714)
DNA (1206bp) protein (402aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
Carbamoyl-phosphate synthase small chain n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGS6_PELHB
carbamoyl-phosphate synthase small subunit
SCN18_25_8_15_R2_B_scaffold_1846_9
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8902..9360
DNA (459bp) protein (153aa)
Transamidase GatB domain protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGS5_PELHB
Glutamyl-tRNA amidotransferase {ECO:0000313|EMBL:KFL31868.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
transamidase GatB domain-containing protein
SCN18_25_8_15_R2_B_scaffold_1846_10
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9361..10524)
DNA (1164bp) protein (388aa)
Diguanylate cyclase n=1 Tax=Nitratireductor indicus C115 RepID=K2P9U6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFL31865.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
diguanylate cyclase
SCN18_25_8_15_R2_B_scaffold_1846_11
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10606..11790)
DNA (1185bp) protein (395aa)
Major facilitator superfamily MFS_1 n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TK88_MESCW
MFS transporter {ECO:0000313|EMBL:KFL31864.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
major facilitator superfamily protein
SCN18_25_8_15_R2_B_scaffold_1846_12
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11978..12538
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGS4_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL31863.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1846_13
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12581..12979)
DNA (399bp) protein (133aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL31862.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCN18_25_8_15_R2_B_scaffold_1846_14
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13124..15058
DNA (1935bp) protein (645aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
DNA primase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGS3_PELHB
DNA primase
SCN18_25_8_15_R2_B_scaffold_1846_15
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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15247..17304
DNA (2058bp) protein (686aa)
RNA polymerase sigma factor RpoD n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGS2_PELHB
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
RNA polymerase sigma factor RpoD
Displaying 15 items

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