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SCN18_25_8_15_R2_B_scaffold_2143

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_2143_1
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..306
DNA (306bp) protein (102aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003641FCD
Uncharacterized protein {ECO:0000313|EMBL:KFL29272.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_2143_2
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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303..713
DNA (411bp) protein (137aa)
5-methyl-dCTP pyrophosphohydrolase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REG3_PELHB
NTP pyrophosphohydrolase {ECO:0000313|EMBL:KFL29273.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
5-methyl-dCTP pyrophosphohydrolase
SCN18_25_8_15_R2_B_scaffold_2143_3
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(754..2235)
DNA (1482bp) protein (494aa)
Putative Zn-dependent protease n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RF09_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB78348.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
putative Zn-dependent protease
SCN18_25_8_15_R2_B_scaffold_2143_4
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2232..3032)
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RF10_PELHB
Nuclease (SNase domain protein) {ECO:0000313|EMBL:KFL29275.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_2143_5
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3179..4006
DNA (828bp) protein (276aa)
Hypothetical conserved protein n=1 Tax=Rhizobium etli (strain CIAT 652) RepID=B3PZ55_RHIE6
Uncharacterized protein {ECO:0000313|EMBL:KFL29276.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_2143_6
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4087..4590
DNA (504bp) protein (168aa)
Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFI9_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL29277.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation
SCN18_25_8_15_R2_B_scaffold_2143_7
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4587..4883)
DNA (297bp) protein (99aa)
Plasmid stabilization system protein n=1 Tax=Rhizobium leguminosarum bv. viciae WSM1455 RepID=J0V2X8_RHILV
Plasmid stabilization system {ECO:0000313|EMBL:KEC74154.1}; TaxID=1408223 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. phaseoli CCGM1.;"
plasmid stabilization protein
SCN18_25_8_15_R2_B_scaffold_2143_8
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4883..5143)
DNA (261bp) protein (87aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HP97_9RHIZ
Addiction module antitoxin {ECO:0000313|EMBL:KFL29279.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
antitoxin (ParD-type) of toxin-antitoxin system
SCN18_25_8_15_R2_B_scaffold_2143_9
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5204..5761)
DNA (558bp) protein (186aa)
HNH endonuclease family protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFI8_PELHB
MFS transporter {ECO:0000313|EMBL:KFL29280.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
HNH endonuclease family protein
SCN18_25_8_15_R2_B_scaffold_2143_10
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5851..6504)
DNA (654bp) protein (218aa)
Esterase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFI7_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL29281.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
phospholipase/carboxylesterase family protein
SCN18_25_8_15_R2_B_scaffold_2143_11
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6501..7178)
DNA (678bp) protein (226aa)
HhH-GPD base excision DNA repair family protein, probable 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFI6_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB78341.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
HhH-GPD base excision DNA repair family protein
SCN18_25_8_15_R2_B_scaffold_2143_12
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7291..8025
DNA (735bp) protein (245aa)
Glutamyl-Q-tRNA synthetase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFI5_PELHB
Glutamyl-Q tRNA(Asp) ligase {ECO:0000313|EMBL:KFL29283.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
glutamyl-Q-tRNA synthetase
SCN18_25_8_15_R2_B_scaffold_2143_13
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8220..9170)
DNA (951bp) protein (317aa)
oxidoreductase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002DFEFEF
Uncharacterized protein {ECO:0000313|EMBL:KFL29284.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_2143_14
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9259..10149
DNA (891bp) protein (297aa)
Transcriptional regulator, LysR family n=1 Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=Q5LX11_RUEPO
Uncharacterized protein {ECO:0000313|EMBL:KFL29285.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
transcriptional regulator, LysR family
SCN18_25_8_15_R2_B_scaffold_2143_15
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10176..10373
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFI4_PELHB
Membrane protein {ECO:0000313|EMBL:KFL29286.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_2143_16
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10521..11111
DNA (591bp) protein (197aa)
Rhomboid family protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFI2_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL29287.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
rhomboid family protein
SCN18_25_8_15_R2_B_scaffold_2143_17
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11176..11358
DNA (183bp) protein (61aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL29288.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCN18_25_8_15_R2_B_scaffold_2143_18
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11369..11572
DNA (204bp) protein (68aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL29289.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCN18_25_8_15_R2_B_scaffold_2143_19
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11569..12228)
DNA (660bp) protein (220aa)
Thiol:disulfide oxidoreductase TlpA n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFH8_PELHB
Sodium:dicarboxylate symporter {ECO:0000313|EMBL:KFL29290.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
thiol:disulfide oxidoreductase TlpA
SCN18_25_8_15_R2_B_scaffold_2143_20
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12252..13700
DNA (1449bp) protein (483aa)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211019}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211017};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_00006}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
Argininosuccinate lyase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFH7_PELHB
argininosuccinate lyase
SCN18_25_8_15_R2_B_scaffold_2143_21
SCNPILOT_EXPT_1000_BF_Devosia_65_23, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13844..14560
DNA (717bp) protein (239aa)
UPI0003CF6BC1 related cluster n=1 Tax=unknown RepID=UPI0003CF6BC1
Uncharacterized protein {ECO:0000313|EMBL:KFL29291.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
cation transporter ChaC-like protein
SCN18_25_8_15_R2_B_scaffold_2143_22
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14647..14760
DNA (114bp) protein (38aa)
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
lysA; diaminopimelate decarboxylase (EC:4.1.1.20)
diaminopimelate decarboxylase n=1 Tax=Thermodesulfatator atlanticus RepID=UPI0003B6F484
Displaying 22 items

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