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SCN18_25_8_15_R2_B_scaffold_2160

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_2160_1
SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11, SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11, SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11, Alphaproteobacteria, Proteobacteria, Bacteria

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2..1132
DNA (1131bp) protein (377aa)
glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase (EC:1.1.5.8)
Quinoprotein glucose dehydrogenase n=1 Tax=Pseudomonas sp. M47T1 RepID=I4MYT6_9PSED
Uncharacterized protein {ECO:0000313|EMBL:KFL30953.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCN18_25_8_15_R2_B_scaffold_2160_2
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1224..1634)
DNA (411bp) protein (137aa)
Activator of HSP90 ATPase n=1 Tax=Asticcacaulis sp. AC460 RepID=V4PID4_9CAUL
Polyketide cyclase {ECO:0000313|EMBL:KFL30952.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
activator of Hsp90 ATPase 1 family protein
SCN18_25_8_15_R2_B_scaffold_2160_3
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1645..2013)
DNA (369bp) protein (123aa)
hypothetical protein n=1 Tax=Burkholderia sp. JPY347 RepID=UPI000368D670
Uncharacterized protein {ECO:0000313|EMBL:KFL30951.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_2160_4
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2021..2455)
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0BX15_HYPNA
Histidine kinase {ECO:0000313|EMBL:KFL30950.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_2160_5
SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2455..2706)
DNA (252bp) protein (84aa)
membrane protein n=1 Tax=Saccharopolyspora spinosa RepID=UPI000237B47C
Membrane protein {ECO:0000313|EMBL:KFL30949.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
transmembrane protein
SCN18_25_8_15_R2_B_scaffold_2160_6
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2703..3026)
DNA (324bp) protein (108aa)
Transcriptional regulator, ArsR family n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQ43_NITHX
ArsR family transcriptional regulator {ECO:0000313|EMBL:KFL30948.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
ArsR family transcriptional regulator
SCN18_25_8_15_R2_B_scaffold_2160_7
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3198..5048
DNA (1851bp) protein (617aa)
Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YFA8_MOBAS
Uncharacterized protein {ECO:0000313|EMBL:KFL30946.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
GAF sensor-containing diguanylate cyclase/phosphodiesterase
SCN18_25_8_15_R2_B_scaffold_2160_8
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5122..6114
DNA (993bp) protein (331aa)
Putative uncharacterized protein n=1 Tax=uncultured organism RepID=D8VMW0_9ZZZZ
C4-dicarboxylate ABC transporter substrate-binding protein {ECO:0000313|EMBL:KFL30945.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_2160_9
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6111..6608
DNA (498bp) protein (166aa)
Putative tricarboxylic transport membrane protein n=1 Tax=uncultured organism RepID=D8VMW1_9ZZZZ
C4-dicarboxylate ABC transporter {ECO:0000313|EMBL:KFL30944.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
putative tricarboxylic transport membrane protein
SCN18_25_8_15_R2_B_scaffold_2160_10
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6610..8157
DNA (1548bp) protein (516aa)
Putative uncharacterized protein n=1 Tax=uncultured organism RepID=D8VMW2_9ZZZZ
Tripartite tricarboxylate transporter TctA {ECO:0000313|EMBL:KFL30943.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_2160_11
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8431..8601)
DNA (171bp) protein (57aa)
Putative uncharacterized protein n=1 Tax=uncultured organism RepID=D8VMW3_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:KKB76684.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_2160_12
SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8710..9228)
DNA (519bp) protein (173aa)
Acetyltransferase n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KMP9_MESAW
Uncharacterized protein {ECO:0000313|EMBL:KKB76683.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
acetyltransferase
SCN18_25_8_15_R2_B_scaffold_2160_13
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9565..10845)
DNA (1281bp) protein (427aa)
5-aminolevulinate synthase {ECO:0000256|RuleBase:RU910713}; EC=2.3.1.37 {ECO:0000256|RuleBase:RU910713};; 5-aminolevulinic acid synthase {ECO:0000256|RuleBase:RU910713}; Delta-ALA synthase {ECO:0000256|RuleBase:RU910713}; Delta-aminolevulinate synthase {ECO:0000256|RuleBase:RU910713}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
5-aminolevulinate synthase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9L3_PELHB
5-aminolevulinate synthase
SCN18_25_8_15_R2_B_scaffold_2160_14
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11206..11406
DNA (201bp) protein (67aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB76681.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
SCN18_25_8_15_R2_B_scaffold_2160_15
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11407..12531
DNA (1125bp) protein (375aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL30941.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCN18_25_8_15_R2_B_scaffold_2160_16
scnpilot_dereplicated_Eukaryote_Rotifera_1, scnpilot_dereplicated_Eukaryote_Rotifera_1, scnpilot_dereplicated_Eukaryote_Rotifera_1, scnpilot_dereplicated_Eukaryote_Rotifera_1, scnpilot_dereplicated_Eukaryote_Rotifera_1, Eukaryote

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12541..13611
DNA (1071bp) protein (357aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. Pop5 RepID=K0WFR4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFL30940.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_2160_17
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13741..14406
DNA (666bp) protein (222aa)
Outer membrane lipoprotein omp16 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9L4_PELHB
Cell envelope biogenesis protein OmpA {ECO:0000313|EMBL:KFL30939.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
outer membrane lipoprotein omp16 precursor
SCN18_25_8_15_R2_B_scaffold_2160_18
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14452..14745)
DNA (294bp) protein (98aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL30938.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCN18_25_8_15_R2_B_scaffold_2160_19
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14745..14999)
DNA (255bp) protein (85aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL30937.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCN18_25_8_15_R2_B_scaffold_2160_20
Enterobacter cloacae_SCNPILOT_CONT_500_P_Enterobacter_55_6.1, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15144..16754
DNA (1611bp) protein (537aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SJW8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB76676.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_2160_21
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16832..17221
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00036EF856
Photosystem reaction center subunit H {ECO:0000313|EMBL:KFL30936.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
photosystem reaction center subunit H
SCN18_25_8_15_R2_B_scaffold_2160_22
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17346..18965)
DNA (1620bp) protein (540aa)
Sensor histidine kinase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9K9_PELHB
Sensor histidine kinase {ECO:0000313|EMBL:KFC68100.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
sensor histidine kinase
SCN18_25_8_15_R2_B_scaffold_2160_23
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19133..19576
DNA (444bp) protein (148aa)
Large-conductance mechanosensitive channel n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9L0_PELHB
Large-conductance mechanosensitive channel {ECO:0000256|HAMAP-Rule:MF_00115, ECO:0000256|SAAS:SAAS00023935}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
large-conductance mechanosensitive channel
SCN18_25_8_15_R2_B_scaffold_2160_24
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19846..20481
DNA (636bp) protein (212aa)
Two component transcriptional regulator, LuxR family protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9L1_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB76673.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
LuxR family transcriptional regulator
SCN18_25_8_15_R2_B_scaffold_2160_25
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20564..21427)
DNA (864bp) protein (288aa)
Decarboxylase family protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGD4_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL30930.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
decarboxylase
SCN18_25_8_15_R2_B_scaffold_2160_26
SCNPILOT_EXPT_1000_BF_Devosia_65_23, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21541..22386
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3KG92_9RHIZ
Membrane protein {ECO:0000313|EMBL:KKB76671.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_2160_27
SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22511..23311)
DNA (801bp) protein (267aa)
NAD-dependent dehydratase n=1 Tax=Pseudomonas syringae RepID=UPI0001E29B59
NAD-dependent dehydratase {ECO:0000313|EMBL:KKB81990.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
NAD-dependent epimerase/dehydratase
Displaying 27 items

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