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SCN18_25_8_15_R2_B_scaffold_393

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Displaying items 1-30 of 88 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_393_trna_1
unknown

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1322..1395
DNA (74bp)
transferRNA Met
SCN18_25_8_15_R2_B_scaffold_393_1
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2172..3839
DNA (1668bp) protein (556aa)
ABC-type dipeptide transport system n=1 Tax=Oceanibaculum indicum P24 RepID=K2KCT7_9PROT
Peptide ABC transporter {ECO:0000313|EMBL:KJB95284.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
peptide ABC transporter
SCN18_25_8_15_R2_B_scaffold_393_2
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3946..4899
DNA (954bp) protein (318aa)
ABC-type dipeptide/oligopeptide/nickel transport system n=1 Tax=Oceanibaculum indicum P24 RepID=K2JXP9_9PROT
diguanylate cyclase
Diguanylate cyclase {ECO:0000313|EMBL:AIB10771.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
SCN18_25_8_15_R2_B_scaffold_393_3
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4896..5849
DNA (954bp) protein (318aa)
ABC-type dipeptide/oligopeptide/nickel transport system, permease component n=1 Tax=Rhizobium leguminosarum bv. viciae WSM1455 RepID=J0UZF0_RHILV
ABC-type dipeptide/oligopeptide/nickel transport system, permease component {ECO:0000313|EMBL:EJC66098.1}; Flags: Precursor;; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
oppC2; putative oligopeptide transport system permease protein oppC (ABC superfamily, membrane)
SCN18_25_8_15_R2_B_scaffold_393_4
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5756..6379)
DNA (624bp) protein (208aa)
SCN18_25_8_15_R2_B_scaffold_393_5
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6380..7306)
DNA (927bp) protein (309aa)
UPI0003D1AD20 related cluster n=1 Tax=unknown RepID=UPI0003D1AD20
Contig35, whole genome shotgun sequence {ECO:0000313|EMBL:ETA52253.1}; TaxID=1169855 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae.;" source="Rhodobacteraceae bacterium PD-2.;"
LysR family transcriptional regulator
SCN18_25_8_15_R2_B_scaffold_393_6
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7424..8314
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Sagittula stellata E-37 RepID=A3K4U7_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EBA07996.1}; TaxID=388399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sagittula.;" source="Sagittula stellata E-37.;"
hydrolase
SCN18_25_8_15_R2_B_scaffold_393_7
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8292..9203
DNA (912bp) protein (304aa)
UPI0003D1B0C2 related cluster n=1 Tax=unknown RepID=UPI0003D1B0C2
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:EBA07997.1}; TaxID=388399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sagittula.;" source="Sagittula stellata E-37.;"
alpha/beta hydrolase fold protein
SCN18_25_8_15_R2_B_scaffold_393_8
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9209..10771
DNA (1563bp) protein (521aa)
ABC transporter, substrate-binding protein, family 5 n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RLQ2_9PROT
ABC transporter, substrate-binding protein, family 5 {ECO:0000313|EMBL:EFH11790.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA
SCN18_25_8_15_R2_B_scaffold_393_9
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10891..11862
DNA (972bp) protein (324aa)
Putative transmembrane ABC transporter n=1 Tax=Rhizobium sp. CCGE 510 RepID=J6DL28_9RHIZ
Putative transmembrane ABC transporter {ECO:0000313|EMBL:EJT02459.1}; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
transmembrane ABC transporter
SCN18_25_8_15_R2_B_scaffold_393_10
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11876..12793
DNA (918bp) protein (306aa)
Peptide ABC transporter permease n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FBR8_9RHIZ
Oligopeptide ABC superfamily transporter membrane protein
Oligopeptide ABC superfamily transporter membrane protein {ECO:0000313|EMBL:AHF75788.1}; TaxID=1239307 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Sodalis.;" source="Sodalis praecaptivus.;"
SCN18_25_8_15_R2_B_scaffold_393_11
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12790..13797
DNA (1008bp) protein (336aa)
Probable oligopeptide atp-binding abc transporter protein n=1 Tax=Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601) RepID=Q0FTZ7_PELBH
Probable oligopeptide atp-binding abc transporter protein {ECO:0000313|EMBL:EAU47602.1}; TaxID=314265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pelagibaca.;" source="Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601).;"
ATP-binding ABC transporter
SCN18_25_8_15_R2_B_scaffold_393_12
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13794..14807
DNA (1014bp) protein (338aa)
Peptide ABC transporter ATP-binding protein n=1 Tax=Advenella kashmirensis W13003 RepID=V8QS66_9BURK
Peptide ABC transporter ATP-binding protein {ECO:0000313|EMBL:ETF02821.1}; TaxID=1424334 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis W13003.;"
appF1; oligopeptide transport ATP-binding protein AppF
SCN18_25_8_15_R2_B_scaffold_393_13
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15559..16308)
DNA (750bp) protein (250aa)
ABC transporter n=1 Tax=Pseudomonas fluorescens RepID=UPI0002EF8B09
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EXF92968.1}; TaxID=1042209 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens HK44.;"
amino acid ABC transporter ATP-binding protein
SCN18_25_8_15_R2_B_scaffold_393_14
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16317..17018)
DNA (702bp) protein (234aa)
Putative ABC-type amino acid transporter, permease component n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9I9N8_BORPD
ABC transporter, permease protein {ECO:0000313|EMBL:KCB41800.1}; TaxID=1331257 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 5132.;"
amino acid ABC transporter permease
SCN18_25_8_15_R2_B_scaffold_393_15
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(17024..17719)
DNA (696bp) protein (232aa)
Amino acids ABC transporter, permease protein n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9I9P1_BORPD
amino acids ABC transporter permease
Amino acids ABC transporter, permease protein {ECO:0000313|EMBL:CAP44488.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCN18_25_8_15_R2_B_scaffold_393_16
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(17724..18554)
DNA (831bp) protein (277aa)
Probable solute-binding protein n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9I9P2_BORPD
solute-binding protein
Probable solute-binding protein {ECO:0000313|EMBL:CAP44489.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCN18_25_8_15_R2_B_scaffold_393_17
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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18853..20388
DNA (1536bp) protein (512aa)
Substrate-CoA ligase n=2 Tax=Alcaligenes RepID=M5IY43_9BURK
Substrate-CoA ligase {ECO:0000313|EMBL:KGP02700.1}; TaxID=511 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes.;" source="Alcaligenes faecalis.;"
substrate-CoA ligase
SCN18_25_8_15_R2_B_scaffold_393_18
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20419..21153
DNA (735bp) protein (245aa)
GntR-family transcriptional regulator n=1 Tax=Bordetella avium (strain 197N) RepID=Q2KVG5_BORA1
GntR family transcriptional regulator
GntR family transcriptional regulator {ECO:0000313|EMBL:EJC65144.1}; TaxID=1156918 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes.;" source="Alcaligenes faecalis subsp. faecalis NCIB 8687.;"
SCN18_25_8_15_R2_B_scaffold_393_19
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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21167..21946
DNA (780bp) protein (260aa)
Enoyl-CoA hydratase/isomerase family protein n=1 Tax=Bordetella avium (strain 197N) RepID=Q2KVG7_BORA1
enoyl-CoA hydratase/isomerase family protein
Enoyl-CoA hydratase/isomerase family protein {ECO:0000313|EMBL:CAJ48584.1}; TaxID=360910 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella avium (strain 197N).;"
SCN18_25_8_15_R2_B_scaffold_393_20
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22423..23679)
DNA (1257bp) protein (419aa)
D-amino acid dehydrogenase n=1 Tax=Bordetella sp. FB-8 RepID=UPI00035E1B83
D-amino acid dehydrogenase small subunit {ECO:0000313|EMBL:CEJ14823.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
D-amino acid dehydrogenase small subunit
SCN18_25_8_15_R2_B_scaffold_393_21
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23787..24353
DNA (567bp) protein (189aa)
SCN18_25_8_15_R2_B_scaffold_393_22
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(24365..25420)
DNA (1056bp) protein (352aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00036AA097
Uncharacterized protein {ECO:0000313|EMBL:KHJ53199.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
chemotaxis protein CheY
SCN18_25_8_15_R2_B_scaffold_393_23
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25443..25886)
DNA (444bp) protein (148aa)
Two-component response regulator n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFP5_PELHB
Chemotaxis protein CheY {ECO:0000313|EMBL:KKB10006.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
two-component response regulator
SCN18_25_8_15_R2_B_scaffold_393_24
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25883..27457)
DNA (1575bp) protein (525aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
Cyanobacterial phytochrome B n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQ00_9RHIZ
two component sensor kinase
SCN18_25_8_15_R2_B_scaffold_393_25
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27615..28139)
DNA (525bp) protein (175aa)
Twin-arginine translocation pathway signal n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IRU8_RHOP2
twin-arginine translocation pathway signal
Twin-arginine translocation pathway signal {ECO:0000313|EMBL:ABD09062.1}; Flags: Precursor;; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCN18_25_8_15_R2_B_scaffold_393_26
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28206..28613
DNA (408bp) protein (136aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IRU6_RHOP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD09064.1}; Flags: Precursor;; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCN18_25_8_15_R2_B_scaffold_393_27
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28610..28990
DNA (381bp) protein (127aa)
Regulatory protein ArsR n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IFI2_XANP2
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:KFC66553.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
regulatory protein ArsR
SCN18_25_8_15_R2_B_scaffold_393_28
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29022..30095
DNA (1074bp) protein (358aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PTV7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KFC66552.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_393_29
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30245..31039
DNA (795bp) protein (265aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037B4C40
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61804.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Displaying items 1-30 of 88 in total

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