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SCN18_25_8_15_R2_B_scaffold_933

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_933_1
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1..372
DNA (372bp) protein (124aa)
Homogentisate 1,2-dioxygenase {ECO:0000256|HAMAP-Rule:MF_00334, ECO:0000256|SAAS:SAAS00015626}; Short=HGDO {ECO:0000256|HAMAP-Rule:MF_00334};; EC=1.13.11.5 {ECO:0000256|HAMAP-Rule:MF_00334, ECO:0000256|SAAS:SAAS00015614};; Homogentisate oxygenase {ECO:0000256|HAMAP-Rule:MF_00334}; Homogentisic acid oxidase {ECO:0000256|HAMAP-Rule:MF_00334}; Homogentisicase {ECO:0000256|HAMAP-Rule:MF_00334}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
homogentisate 1,2-dioxygenase (EC:1.13.11.5)
Homogentisate 1,2-dioxygenase n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QHB8_BREDI
SCN18_25_8_15_R2_B_scaffold_933_2
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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369..1679
DNA (1311bp) protein (437aa)
hmgB; fumarylacetoacetase (EC:3.7.1.2)
Fumarylacetoacetase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0J515_9SPHN
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
SCN18_25_8_15_R2_B_scaffold_933_3
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1923..3614
DNA (1692bp) protein (564aa)
Peptidase M61 domain-containing protein n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y3D8_9PROT
Peptidase M61 domain-containing protein {ECO:0000313|EMBL:EGX99966.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
peptidase M61 domain-containing protein
SCN18_25_8_15_R2_B_scaffold_933_4
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3645..4898
DNA (1254bp) protein (418aa)
Aminotransferase, class V n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0BZ15_HYPNA
class V aminotransferase
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCN18_25_8_15_R2_B_scaffold_933_5
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4895..5857
DNA (963bp) protein (321aa)
ornithine cyclodeaminase (EC:4.3.1.12)
Putative ornithine cyclodeaminase, mu-crystallin n=1 Tax=Novosphingobium sp. AP12 RepID=J3AIA2_9SPHN
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
SCN18_25_8_15_R2_B_scaffold_933_6
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5850..7169
DNA (1320bp) protein (440aa)
Amino acid permease n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HT84_9SPHN
Amino acid permease {ECO:0000313|EMBL:EQB16297.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
amino acid permease-associated protein
SCN18_25_8_15_R2_B_scaffold_933_7
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7166..8662
DNA (1497bp) protein (499aa)
Carboxypeptidase C (Cathepsin A) n=1 Tax=Novosphingobium sp. AP12 RepID=J2PV42_9SPHN
peptidase S10 serine carboxypeptidase
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
SCN18_25_8_15_R2_B_scaffold_933_8
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8669..9646)
DNA (978bp) protein (326aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00037603F4
ocd; ornithine cyclodeaminase
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
SCN18_25_8_15_R2_B_scaffold_933_9
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9677..11800)
DNA (2124bp) protein (708aa)
Amidohydrolase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V909_SPHWW
Amidohydrolase family protein {ECO:0000313|EMBL:GAM99040.1}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
amidohydrolase
SCN18_25_8_15_R2_B_scaffold_933_10
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11859..13040)
DNA (1182bp) protein (394aa)
aminotransferase (EC:2.6.1.-)
Aminotransferase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IEU2_9SPHN
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
SCN18_25_8_15_R2_B_scaffold_933_11
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13189..13674
DNA (486bp) protein (162aa)
Transcriptional regulator, AsnC family n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y3D9_9PROT
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:EGX99967.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
AsnC family transcriptional regulator
SCN18_25_8_15_R2_B_scaffold_933_12
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13690..15228)
DNA (1539bp) protein (513aa)
UPI0003D02360 related cluster n=1 Tax=unknown RepID=UPI0003D02360
peptidase S10 serine carboxypeptidase
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
SCN18_25_8_15_R2_B_scaffold_933_13
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15236..16546)
DNA (1311bp) protein (437aa)
Imidazolonepropionase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RCT3_PHEZH
imidazolonepropionase
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
SCN18_25_8_15_R2_B_scaffold_933_14
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16543..18000)
DNA (1458bp) protein (486aa)
UPI0003CFE01A related cluster n=1 Tax=unknown RepID=UPI0003CFE01A
amidohydrolase
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
SCN18_25_8_15_R2_B_scaffold_933_15
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17997..19481)
DNA (1485bp) protein (495aa)
Peptidase S10, serine carboxypeptidase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V907_SPHWW
peptidase S10, serine carboxypeptidase
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
SCN18_25_8_15_R2_B_scaffold_933_16
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19553..22537)
DNA (2985bp) protein (995aa)
TonB-dependent receptor n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y0D7_9PROT
outer membrane receptor (OMR) family protein
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
SCN18_25_8_15_R2_B_scaffold_933_17
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22950..24260)
DNA (1311bp) protein (437aa)
L-sorbosone dehydrogenase n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QGY2_BREDI
L-sorbosone dehydrogenase {ECO:0000313|EMBL:EKY26822.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
L-sorbosone dehydrogenase
SCN18_25_8_15_R2_B_scaffold_933_18
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24257..24673)
DNA (417bp) protein (139aa)
Tat pathway signal sequence domain protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QFW8_BREDI
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:EKY26821.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_933_19
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24670..24882)
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QGP4_BREDI
Uncharacterized protein {ECO:0000313|EMBL:EKY26820.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
SCN18_25_8_15_R2_B_scaffold_933_trna_1
unknown

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comp(25064..25137)
DNA (74bp)
transferRNA Lys
SCN18_25_8_15_R2_B_scaffold_933_20
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25381..25650
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R1T1_BREDI
Uncharacterized protein {ECO:0000313|EMBL:EGF94323.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_933_21
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25803..27494
DNA (1692bp) protein (564aa)
Surface antigen family protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R1T0_BREDI
Surface antigen family protein {ECO:0000313|EMBL:EGF94322.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
surface antigen (D15)
SCN18_25_8_15_R2_B_scaffold_933_22
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27491..31729
DNA (4239bp) protein (1413aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R1S9_BREDI
Uncharacterized protein {ECO:0000313|EMBL:EGF94321.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_933_23
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31826..32890
DNA (1065bp) protein (355aa)
Radical SAM domain protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QGR9_BREDI
Radical SAM domain protein {ECO:0000313|EMBL:EKY26777.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
radical SAM protein
SCN18_25_8_15_R2_B_scaffold_933_24
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32891..34135)
DNA (1245bp) protein (415aa)
23S rRNA uracil-5--methyltransferase rumA n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R1S6_BREDI
23S rRNA uracil-5--methyltransferase rumA {ECO:0000313|EMBL:EGF94318.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
(uracil-5)-methyltransferase
SCN18_25_8_15_R2_B_scaffold_933_25
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34290..34943
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QGI0_BREDI
Uncharacterized protein {ECO:0000313|EMBL:EKY26775.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_933_26
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35017..35796)
DNA (780bp) protein (260aa)
Ribosomal RNA large subunit methyltransferase J n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QFK6_BREDI
Ribosomal RNA large subunit methyltransferase J {ECO:0000313|EMBL:EKY26774.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
hemolysin A
Displaying 27 items

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