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SCN18_25_8_15_R2_B_scaffold_1037

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_1037_1
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2..1813
DNA (1812bp) protein (604aa)
Peptidase, M61 family n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QEC7_BREDI
Peptidase, M61 family {ECO:0000313|EMBL:EKY25947.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
peptidase M61 domain-containing protein
SCN18_25_8_15_R2_B_scaffold_1037_2
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1964..4015
DNA (2052bp) protein (684aa)
M61 glycyl aminopeptidase family protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R1J2_BREDI
M61 glycyl aminopeptidase family protein {ECO:0000313|EMBL:EGF95064.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
peptidase M61 domain-containing protein
SCN18_25_8_15_R2_B_scaffold_1037_3
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4123..5229
DNA (1107bp) protein (369aa)
Ppx/GppA phosphatase family protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R1J3_BREDI
Ppx/GppA phosphatase family protein {ECO:0000313|EMBL:EGF95065.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
Ppx/GppA phosphatase
SCN18_25_8_15_R2_B_scaffold_1037_4
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5258..8938
DNA (3681bp) protein (1227aa)
5-oxoprolinase (EC:3.5.2.9)
5-oxoprolinase (ATP-hydrolysing) n=1 Tax=Caulobacter crescentus OR37 RepID=R0ENK4_CAUCE
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
SCN18_25_8_15_R2_B_scaffold_1037_5
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9002..9736
DNA (735bp) protein (245aa)
Membrane protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4Y5K5_SORCE
protein of unknown function DUF969
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
SCN18_25_8_15_R2_B_scaffold_1037_6
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9733..10704
DNA (972bp) protein (324aa)
Membrane protein n=1 Tax=Brevundimonas abyssalis TAR-001 RepID=U2YQR1_9CAUL
membrane protein
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
SCN18_25_8_15_R2_B_scaffold_1037_7
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10701..11711
DNA (1011bp) protein (337aa)
Uncharacterized protein n=1 Tax=Brevundimonas abyssalis TAR-001 RepID=U2Z8L3_9CAUL
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
SCN18_25_8_15_R2_B_scaffold_1037_8
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11792..12586
DNA (795bp) protein (265aa)
Redoxin family protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QJY9_BREDI
Redoxin family protein {ECO:0000313|EMBL:EKY28294.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
redoxin
SCN18_25_8_15_R2_B_scaffold_1037_9
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12726..13940
DNA (1215bp) protein (405aa)
Arabinose efflux permease family protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=I9N423_RHILT
Arabinose efflux permease family protein {ECO:0000313|EMBL:EJB02639.1}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
MFS transporter
SCN18_25_8_15_R2_B_scaffold_1037_10
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14135..14785
DNA (651bp) protein (217aa)
Peroxiredoxin {ECO:0000256|HAMAP-Rule:MF_00401}; EC=1.11.1.15 {ECO:0000256|HAMAP-Rule:MF_00401};; TaxID=391600 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas sp. BAL3.;"
Probable peroxiredoxin n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WC16_9CAUL
1-Cys peroxiredoxin
SCN18_25_8_15_R2_B_scaffold_1037_11
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14850..15746
DNA (897bp) protein (299aa)
beta-lactamase (EC:3.1.2.6)
Metallo-beta-lactamase superfamily protein n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WBY3_9CAUL
Metallo-beta-lactamase superfamily protein {ECO:0000313|EMBL:EDX80408.1}; TaxID=391600 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas sp. BAL3.;"
SCN18_25_8_15_R2_B_scaffold_1037_12
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15881..16822
DNA (942bp) protein (314aa)
Metallo-beta-lactamase superfamily protein n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WBX7_9CAUL
beta-lactamase-like protein
Tax=RIFCSPHIGHO2_12_FULL_Brevundimonas_68_13_curated
SCN18_25_8_15_R2_B_scaffold_1037_13
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16901..17320
DNA (420bp) protein (140aa)
Putative uncharacterized protein n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WBX4_9CAUL
Putative uncharacterized protein {ECO:0000313|EMBL:EDX79603.1}; TaxID=391600 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas sp. BAL3.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1037_14
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17498..19246
DNA (1749bp) protein (583aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000365B9E5
sulfate transporter
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCN18_25_8_15_R2_B_scaffold_1037_15
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19391..19627
DNA (237bp) protein (79aa)
SCN18_25_8_15_R2_B_scaffold_1037_16
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19688..20623)
DNA (936bp) protein (312aa)
Hydrogen peroxide-inducible activator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CY12_9RHIZ
transcriptional regulator, LysR family
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AHK47030.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
SCN18_25_8_15_R2_B_scaffold_1037_17
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20789..22963
DNA (2175bp) protein (725aa)
Catalase-peroxidase {ECO:0000256|HAMAP-Rule:MF_01961, ECO:0000256|RuleBase:RU003451}; Short=CP {ECO:0000256|HAMAP-Rule:MF_01961};; EC=1.11.1.21 {ECO:0000256|HAMAP-Rule:MF_01961, ECO:0000256|RuleBase:RU003451};; Peroxidase/catalase {ECO:0000256|HAMAP-Rule:MF_01961}; TaxID=1107544 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens 5A.;"
Catalase-peroxidase n=1 Tax=Agrobacterium tumefaciens 5A RepID=H0HCP9_RHIRD
katA; catalase
SCN18_25_8_15_R2_B_scaffold_1037_18
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23175..24065)
DNA (891bp) protein (297aa)
Putative hydrogen peroxide-inducible protein activator n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QIW7_BREDI
Putative hydrogen peroxide-inducible protein activator {ECO:0000313|EMBL:EKY27903.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
LysR family transcriptional regulator
SCN18_25_8_15_R2_B_scaffold_1037_19
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24957..25568
DNA (612bp) protein (204aa)
Thiopurine S-methyltransferase superfamily n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WBY6_9CAUL
SAM-dependent methyltransferase {ECO:0000313|EMBL:KDP94246.1}; TaxID=1495854 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas sp. EAKA.;"
type 11 methyltransferase
SCN18_25_8_15_R2_B_scaffold_1037_20
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25737..26150)
DNA (414bp) protein (138aa)
Transcriptional activator hlyU n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QUW0_BREDI
Transcriptional activator hlyU {ECO:0000313|EMBL:EGF96389.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1037_21
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26147..26788)
DNA (642bp) protein (214aa)
AhpC/TSA family protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QUW1_BREDI
AhpC/TSA family protein {ECO:0000313|EMBL:EGF96390.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
peroxiredoxin
SCN18_25_8_15_R2_B_scaffold_1037_trna_1
unknown

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comp(26987..27060)
DNA (74bp)
transferRNA Val
SCN18_25_8_15_R2_B_scaffold_1037_22
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27108..27383)
DNA (276bp) protein (92aa)
DNA-binding protein HU 1 n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R160_BREDI
DNA-binding protein HU 1 {ECO:0000313|EMBL:EGF94187.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
histone family protein DNA-binding protein
SCN18_25_8_15_R2_B_scaffold_1037_23
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27504..29903)
DNA (2400bp) protein (800aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
ATP-dependent protease La (EC:3.4.21.53)
Lon protease n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QPN1_BREDI
SCN18_25_8_15_R2_B_scaffold_1037_24
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30269..31537)
DNA (1269bp) protein (423aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R0Q6_BREDI
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
ATP-dependent Clp protease ATP-binding subunit ClpX
Displaying 25 items

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