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SCN18_25_8_15_R2_B_scaffold_1704

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_1704_1
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..267
DNA (267bp) protein (89aa)
relA; (p)ppGpp synthetase (EC:2.7.6.5)
RelA/SpoT family (P)ppGpp synthetase n=1 Tax=Rhodanobacter denitrificans RepID=I4WM18_9GAMM
RelA/SpoT family (P)ppGpp synthetase {ECO:0000313|EMBL:EIL87745.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
SCN18_25_8_15_R2_B_scaffold_1704_2
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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386..2164
DNA (1779bp) protein (593aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSB0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM02352.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1704_3
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2171..3010
DNA (840bp) protein (280aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSB1_9GAMM
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:EIM02353.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
nucleoside-diphosphate-sugar epimerase
SCN18_25_8_15_R2_B_scaffold_1704_4
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3159..5471
DNA (2313bp) protein (771aa)
Penicillin-binding protein 1B n=1 Tax=Rhodanobacter denitrificans RepID=I4WR29_9GAMM
Penicillin-binding protein 1B {ECO:0000256|PIRNR:PIRNR002799}; Short=PBP-1b {ECO:0000256|PIRNR:PIRNR002799};; Short=PBP1b {ECO:0000256|PIRNR:PIRNR002799};; Murein polymerase {ECO:0000256|PIRNR:PIRNR002799}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
penicillin-binding protein 1B
SCN18_25_8_15_R2_B_scaffold_1704_5
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5468..6016
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSB3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM02355.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1704_6
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6056..8059
DNA (2004bp) protein (668aa)
DNA helicase, Rad3 n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSB5_9GAMM
DNA helicase, Rad3 {ECO:0000313|EMBL:EIM02357.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
DNA helicase, Rad3
SCN18_25_8_15_R2_B_scaffold_1704_7
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8110..8814
DNA (705bp) protein (235aa)
glycoprotease n=1 Tax=Dyella japonica RepID=UPI0002DEC893
glycoprotease
Glycoprotease {ECO:0000313|EMBL:AIF47130.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
SCN18_25_8_15_R2_B_scaffold_1704_8
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8935..9978)
DNA (1044bp) protein (348aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4S8_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCN18_25_8_15_R2_B_scaffold_1704_9
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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10066..10962
DNA (897bp) protein (299aa)
Transcriptional regulator n=1 Tax=Rhodanobacter denitrificans RepID=M4NJD7_9GAMM
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AGG90217.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCN18_25_8_15_R2_B_scaffold_1704_10
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10998..12767)
DNA (1770bp) protein (590aa)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
phosphoenolpyruvate--protein phosphotransferase (EC:2.7.3.9)
Phosphoenolpyruvate-protein phosphotransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSD3_9GAMM
SCN18_25_8_15_R2_B_scaffold_1704_11
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12764..13003)
DNA (240bp) protein (80aa)
SCN18_25_8_15_R2_B_scaffold_1704_12
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13005..13274)
DNA (270bp) protein (90aa)
phosphocarrier protein HPr n=1 Tax=Dyella japonica RepID=UPI0002D524AE
phosphocarrier protein HPr
Phosphocarrier protein HPr {ECO:0000313|EMBL:AIF47139.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
SCN18_25_8_15_R2_B_scaffold_1704_13
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13267..13638)
DNA (372bp) protein (124aa)
Phosphotransferase system, mannose/fructose-specific component IIA n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4T2_9GAMM
Phosphotransferase system, mannose/fructose-specific component IIA {ECO:0000313|EMBL:EIL94473.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
PTS system fructose IIA component family protein
SCN18_25_8_15_R2_B_scaffold_1704_14
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13709..14614)
DNA (906bp) protein (302aa)
UPF0042 nucleotide-binding protein UU7_04297 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4T3_9GAMM
Nucleotide-binding protein UU7_04297 {ECO:0000256|HAMAP-Rule:MF_00636}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
putative P-loop-containing kinase
SCN18_25_8_15_R2_B_scaffold_1704_15
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14620..15528)
DNA (909bp) protein (303aa)
HPr kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058411}; Short=HPrK/P {ECO:0000256|HAMAP-Rule:MF_01249};; EC=2.7.11.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058427};; EC=2.7.4.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058435};; HPr(Ser) kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
serine kinase of the HPr protein, regulates carbohydrate metabolism (EC:2.7.1.-)
HPr kinase/phosphorylase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4T4_9GAMM
SCN18_25_8_15_R2_B_scaffold_1704_16
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(15728..16051)
DNA (324bp) protein (108aa)
Ribosomal subunit interface protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4T5_9GAMM
Ribosomal subunit interface protein {ECO:0000313|EMBL:EIL94476.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
ribosomal subunit interface protein
SCN18_25_8_15_R2_B_scaffold_1704_17
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(16201..17679)
DNA (1479bp) protein (493aa)
RNA polymerase sigma-54 factor n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4T6_9GAMM
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
RNA polymerase, sigma 54 subunit, RpoN/SigL
SCN18_25_8_15_R2_B_scaffold_1704_18
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(17890..18591)
DNA (702bp) protein (234aa)
ABC transporter ATPase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VKN6_9GAMM
sugar ABC transporter ATP-binding protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
Displaying 18 items

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